Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4563 127 2e-24 seq4720 98.7 1e-15 seq3469 82.4 9e-11 >seq4563 Length=5383265 Score = 127 bits (140), Expect = 2e-24 Identities = 585/921 (64%), Gaps = 23/921 (2%) Strand=Plus/Minus Query 105925 TCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTG 105984 |||||| ||| || || || || || || || || |||| || || |||| || || Sbjct 4594594 TCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAGATTCGTTGTTGCCCATAATCTG 4594535 Query 105985 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTT 106044 || || || ||||||||||| || || | || || ||| || | ||| | | ||| Sbjct 4594534 AGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGGAGTTCCGGACACCGTGCTTCTT 4594475 Query 106045 GATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTT---CCCACAT 106101 || ||||| || | |||||| || || || || | ||| ||||||| Sbjct 4594474 TATCGACTCCTTTAGCTTTTGCCAGTCCCAG---AGGTTCGTCGGAACTTTGTCCCACAT 4594418 Query 106102 ATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTG 106161 || | || | | |||| | || |||||| | || || || | |||| Sbjct 4594417 GTCGTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCATAAGTTTCGTATGGGCCTTC 4594358 Query 106162 GGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACG 106221 | | ||| |||||||| || || |||| | | | || || ||||| || || | Sbjct 4594357 GATCTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATAGTAAATCGTTTCGAATATCTG 4594298 Query 106222 AGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATC 106281 ||||| | |||||||| ||| ||| | | || | ||| ||| |||| Sbjct 4594297 CTGATTCAAGAGGCTCGCTTCATCACTTTCATATGGGAATCGCATGAGAATTAATGCATC 4594238 Query 106282 CGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGT 106341 || | || ||||| || | || | || | || | || ||| ||||| | || | Sbjct 4594237 AGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAAATTGGACTTCCTTGCC-T 4594179 Query 106342 CT--CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 106399 || || ||| |||||| || | || || | ||| |||||| ||||||| |||| Sbjct 4594178 CTGGCAGCGG-ATAAAAGTTGATATCGATTATCTTGTTGAGATTTCTGGTAACCGTCTTG 4594120 Query 106400 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTT 106456 |||| ||| | ||||||| |||| | || || ||| ||||| || | Sbjct 4594119 GTGACTTCCTTTAGTTTTTTGAAATCGTATGT------CTTTTCCGGTGTGACAAACATG 4594066 Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 ||| || || |||||||| || ||||| || |||||||| | |||||| | | Sbjct 4594065 TTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGAGTACTCGACA 4594006 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 |||||||| |||||||| | ||||| || || | ||||| ||||||||||| || Sbjct 4594005 ATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTTACTCTTCCTG 4593946 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| ||||||||| ||||||| || || | || || ||| |||| | | ||| Sbjct 4593945 TTGCAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGCTTCAATAATG 4593886 Query 106637 GCCTTCCACA--CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACT 106694 || ||| | || | || || | |||||| || ||||| ||| || | Sbjct 4593885 GCGAACCATAAGGATTG--AGCCTTAACTGTTCGGTTGGCACGGCCCTCTTGCTCATATT 4593828 Query 106695 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 106754 | || | |||||| || || ||| | ||| || || || |||| | Sbjct 4593827 TCACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGGGCATTTGTGCG 4593768 Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 | || | ||| ||||| | ||| |||| || || ||||||||||| || || |||| Sbjct 4593767 GGCACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAGATCAGGTATCC 4593708 Query 106815 ACAGGGATGAAAAGAGATCTC 106835 ||| || |||| ||||||| Sbjct 4593707 ACAAGGCGTAAAAAAGATCTC 4593687 >seq4720 Length=6167446 Score = 98.7 bits (108), Expect = 1e-15 Identities = 274/417 (66%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 9186 ATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 9245 |||| ||||| |||||||| || || | || || | || || ||||| || || || Sbjct 103521 ATCTGTCGATCGAAGCGACCCGGCCGCATAAGGGCCTTGTCGAGAATATCTACACGGTTA 103462 Query 9246 GTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGT 9305 || || || | || || | | ||| ||| ||||||||||||||| || |||| Sbjct 103461 GTGGCCGCCAGCACCACCACATTCGTTGTTGTATTAAAACCATCCATCTCAACCAGAAGT 103402 Query 9306 TGGTTAATAGTTTGTTCCCGTTCATCATT-----CGCTGG-CATACCACCAGCACTGCGT 9359 ||||| | || | ||| | ||| | || || | | || ||| ||| Sbjct 103401 TGGTTGAGGGTATTCTCCTGCTCAGAGTGGCCGCCGAAGGTCTTTCCTCCA------CGT 103348 Query 9360 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 9419 | | ||||| || || || || ||||| || | || || ||| || | |||||| Sbjct 103347 TTCCGACCCACAGCGTCGATTTCGTCAATAAATAGGATGCAGGGTGCATGCTTGCGGGCC 103288 Query 9420 ATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9479 || | || | || ||||| | | ||||| || ||||||||||| | ||| | | Sbjct 103287 ATGGCGAACATGTCACGAACACGCGAAGGTCCCACGCCCACAAACATCTCGAGAAACTCT 103228 Query 9480 GCGGCGGAACATTGG-ATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9538 | | |||| || | |||||||| ||||||| ||| || || |||| ||| ||||| Sbjct 103227 GAGCCGGA-CACGGTTATGAAGGGCACATTAGCTTCGCCGGCGGTGGCCTTGGCCAGAAG 103169 Query 9539 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 || |||||||| || || || | || | ||| ||| ||| ||||||||||| Sbjct 103168 CGTTTTACCCGTGCCGGGTGGGCCGGTTAGCATGGCCCCCTTTGGTATCTTGGCGCC 103112 >seq3469 Length=8968 Score = 82.4 bits (90), Expect = 9e-11 Identities = 165/239 (69%), Gaps = 12/239 (5%) Strand=Plus/Plus Query 9447 GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGAC 9505 || || ||||| |||||||| |||||||||| | ||||| || | || ||| || || Sbjct 1415 GCACCAACACCGACAAACATTTCCACAAAGTCAGACCCGGAA-ATGGTGAAGAACGGCAC 1473 Query 9506 ATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGC 9565 ||| | |||||||||||||| || || || || ||||||||||| || || || | Sbjct 1474 ATTGGCCTCACCCGCAATGGCACGCGCCAGCAGGGTCTTACCCGTGCCCGGAGGTCCGAC 1533 Query 9566 GAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAA---GT--ATCTCTCAGGTTGC 9620 || ||| | ||| || || || ||||| ||| | || || ||| || | Sbjct 1534 CAGCAGGACGCCCTTGGGGATTTT---GCCAC--CCAGACGGGTAAATTTCTGCGGGTCT 1588 Query 9621 TTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 || || || || ||||| || | | |||| | ||||| | ||||| ||| |||| || Sbjct 1589 TTCAGGAAGTCGACAATTTCCTGAAGTTCACCCTTGGCTTCATCAATACCCGCAACGTC 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589944324437040