Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4563 206 3e-48 >seq4563 Length=5383265 Score = 206 bits (228), Expect = 3e-48 Identities = 1169/1878 (62%), Gaps = 26/1878 (1%) Strand=Plus/Minus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || ||||| || |||| ||| | ||| |||| ||||| || | ||||||||| || Sbjct 4594971 TTGTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATTCCG 4594912 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 || || | || |||| || || || || || | ||| ||| | || Sbjct 4594911 GTTTTGAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGTTTGGC 4594852 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 |||| | ||| ||||||| || ||||||||||| ||||| ||||| | |||||| ||| Sbjct 4594851 TCTGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAGCGGCC 4594792 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213 || | | | | | | || ||||| || ||||| |||| | || || Sbjct 4594791 ATTTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAAC--CT 4594734 Query 47214 TCTGGGAGATTAGT------ATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267 |||| | || |||| ||||||||| || || | | | || |||| ||| || Sbjct 4594733 TCTGTG-GAATAGTCTCAATATTTTGAATTGAACCCCTGCTGGAAATGATTTGGTTCTTC 4594675 Query 47268 aattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATT 47327 | |||| ||| | | | ||||| || | || | |||| | ||||| | Sbjct 4594674 ATGTCATCGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAATGATGGTTAACCACC 4594615 Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || ||||| ||||| || ||||| | | |||| |||||| | ||||| || || | |||| Sbjct 4594614 TGGAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAGAT 4594555 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 || || || || | ||| |||||||| |||||||| ||||| | ||||| | | | Sbjct 4594554 TCGTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGGAG 4594495 Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507 || | || || | || | |||| || ||| ||||| || | | Sbjct 4594494 TTCCGGACACCGTGCTTCTTTATCGACTCCTTTAGCTTTTGCCAGTCCCAGAGGTTCGTC 4594435 Query 47508 GGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATAT 47567 ||||| | ||| | || || || | ||||||||| |||| ||| || | ||| Sbjct 4594434 GGAACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCATAA 4594375 Query 47568 GTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATAT 47627 |||| || || || | | | ||| | ||||||||| |||||||| || | ||| || Sbjct 4594374 GTTTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATAGTAA 4594315 Query 47628 ATTGTTTCAAATATTTTTATGTTT--AGATTCCTTGCTTCTGATGA--TTCAAAAGGATA 47683 || ||||| ||||| | || || ||| | | ||||| || | |||| | || | Sbjct 4594314 ATCGTTTCGAATATCTGC-TGATTCAAGAGGC-TCGCTTC--ATCACTTTCATATGGGAA 4594259 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 |||| ||| || || || ||||| || || || | || | ||| | Sbjct 4594258 TCGCATGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCT 4594199 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 ||| || | || ||||| | ||||| ||| ||||| || || || || || Sbjct 4594198 CAAATTGGACTTCCTTGCCTCTGGCAGCGGATAAAAGTTGATATCGATTATCTTGTTGAG 4594139 Query 47804 ANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATT--- 47860 | | ||| ||| ||| || ||||| | | || | Sbjct 4594138 ATTTCTGGTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTATGTCTTTTCCGG 4594079 Query 47861 TATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATT 47920 | | |||||| | ||||| || || ||||| | ||||| || || | ||||| || Sbjct 4594078 TGTGACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGA 4594019 Query 47921 AGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATG 47980 | || | | ||||| | || | |||| ||||| || || || | ||| || || Sbjct 4594018 GGAGTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTG 4593959 Query 47981 ATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTG 48040 ||| | |||| || || |||||| | |||||| | || |||||||||| | || Sbjct 4593958 GTTACTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTG 4593899 Query 48041 AGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC---TAGCTTTATT 48097 | |||||| || | ||| | | |||||| ||| | || | || Sbjct 4593898 TGCTTCAATAATGGCGAACCATAAGGATTGAGCCTT---AACTGTTCGGTTGGCACGGCC 4593842 Query 48098 ATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCC 48157 || || || ||||| ||||||||| ||||||||||| || | |||| | | || Sbjct 4593841 CTCTTGCTCATATTTCACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCC 4593782 Query 48158 AGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAA 48217 ||| |||| | || ||||| | |||||||| ||| | ||| | |||| || Sbjct 4593781 AGGGCATTTGTGCGGGCACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCATGAA 4593722 Query 48218 TATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACT 48277 | ||| |||||||| | || ||| | ||| | | | ||||| |||||| | Sbjct 4593721 AAGATCAGGTATCCACAAGGCGTAAAAAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGT 4593662 Query 48278 ATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGC 48337 || | || ||||| ||||| || | | ||||| ||||| || || | || || || Sbjct 4593661 GTTTTTCTTGAGTTCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGC 4593602 Query 48338 CATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAAC 48397 | | ||||| || || ||||| ||||| | ||| | ||| || || | || Sbjct 4593601 AAAGGCTCCTGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTATTGAAGAC 4593542 Query 48398 TCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACT 48457 || | ||| || || | ||||| || | ||||| ||||| | || || | || | Sbjct 4593541 CCTCAGCATGGGAACCAGTCCATTGGAAGTTCCATTTGTTCCGCATATCGAAGTACCCTT 4593482 Query 48458 AGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACA 48517 |||| ||| | || | || || ||||| || |||||| || | ||||| Sbjct 4593481 TGCTCGGATACAATGAACATTTAGTCCAATGCCACCAGCAGATTTAGAAATCATGGCACA 4593422 Query 48518 CCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACA 48577 | | | | | | |||| ||||| || || || |||| |||| || ||||| Sbjct 4593421 TTGCTCCACAGACTTAAAAATGCCTTCGATGGAGTCGGCTGTCATGGTTAAAAGGAAACA 4593362 Query 48578 ACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAA 48637 ||| | ||||| || || ||| ||| | ||||| ||||||||| | || Sbjct 4593361 TGAAGATAGCTGCGGCCGATTTGTGGCTGCTGCAAAAAGCGTTGGTGATGCATGAGTGAA 4593302 Query 48638 CCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTAT 48697 | |||||| || | ||||| ||||| | | | || ||||| || || Sbjct 4593301 GTACCGCTCTGACAAAAGATTATACGTTTCTACGGCCGCGTCGATATCTTCCCCGTGGAT 4593242 Query 48698 ACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTT 48757 || || | || ||||| ||||||| ||| || | |||| | || || ||| | || Sbjct 4593241 TCCGATCGCAACGCGCATCAACATATGTTGCGGCCGTTCAGCGATCTTACCGTTTCTCTT 4593182 Query 48758 CAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817 || | ||| || ||| | |||||||| || ||||| || || ||||||| ||| Sbjct 4593181 TAACAAATAAGAACGTTCGAGGGTTTTAAACCCGAAATAATTATACCCAAAGTCGCGATC 4593122 Query 48818 ATTAATAATTGATGAATT 48835 | || || |||||||| Sbjct 4593121 GTAGATTATAGATGAATT 4593104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562074047623440