Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq980 120 2e-21 seq4465 116 3e-20 seq4811 109 4e-18 seq4190 86.0 5e-11 >seq980 Length=21089 Score = 120 bits (132), Expect = 2e-21 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 ||||||||| |||| ||| || | ||||| || |||| ||| | || || || || Sbjct 3574 AAAATGAAAGAAACCGCCGAGGCGTACCTTGGTGAAAAAGTGACGCAGGCCGTGATCACG 3633 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || || || || ||||| || | || ||||| || || |||||||| || ||||||||| Sbjct 3634 GTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCGACCAAAGATGCAGGCCGTATTGCT 3693 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || ||| | || || ||||| ||||| ||||| || || ||||| ||||| ||||| Sbjct 3694 GGCCTTGAAGTCCTGCGTATCATCAACGAACCGACGGCCGCTGCCCTTGCTTATGG 3749 >seq4465 Length=1195914 Score = 116 bits (128), Expect = 3e-20 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || ||||||||||| | ||||| || || || ||||| ||||| || ||||| || || Sbjct 153914 GTAACGGATGCAGTGGTCACTGTTCCGGCTTACTTTAACGACTCCCAGCGTCAGGCCACC 153973 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || ||||||||| ||||||||| | ||||| ||||| || ||||||||||| || || Sbjct 153974 AAGGATGCTGGAGCTATTGCTGGCTTGAATGTCCTTCGCATCATCAATGAACCGACGGCA 154033 Query 550511 GCTGCACTTGCATATGGACTTGATAAACA 550539 ||||| | || || ||| | ||||| || Sbjct 154034 GCTGCCATAGCCTACGGATTGGATAAGCA 154062 Score = 111 bits (122), Expect = 1e-18 Identities = 274/414 (66%), Gaps = 4/414 (1%) Strand=Plus/Plus Query 552180 TTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCC 552239 |||||||| || | | || || | ||||||| |||||||| || || ||||| || Sbjct 154559 TTCAATGGAAAGGAGCTGAACAAATCTATTAATCCCGATGAGGCAGTGGCTTATGGAGCT 154618 Query 552240 GCAATTCAAGCAGCTATTCTTTCTGG--ACAAACTGATGAAAAACTACAAAATATTGTAC 552297 || |||| ||||| ||||| ||| |||| | || | || || | | | Sbjct 154619 GCCGTTCAGGCAGCCATTCTCCATGGCGACAAGTCG--GAGGCTGTCCAGGATCTCCTTC 154676 Query 552298 TTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATC 552357 | | ||||| |||||||||||||| ||| | ||||| | ||||| | ||||||| | Sbjct 154677 TACTGGATGTCACTCCTCTATCTCTAGGTATTGAAACCGCCGGAGGGGTGATGACTACGC 154736 Query 552358 TTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAG 552417 | ||| | || || || || || || ||| || ||| | ||| | || ||| | | Sbjct 154737 TGATCAAGAGGAACACCACCATACCCACCAAACAAACTCAAATTTTTACCACATATGCGG 154796 Query 552418 ATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATA 552477 | || || | | ||| || || | ||||||||||| | | |||| |||| Sbjct 154797 ACAACCAGCCGGGTGTACTCATCCAGGTGTTTGAAGGAGAGCGCGCGATGACTAGGGATA 154856 Query 552478 ATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGC 552537 | || || |||| || | || || ||||| |||||||| |||||||| || | Sbjct 154857 ACAACAGCCTGGGTAAATTCGAACTATCAGCGATTCCCCCTGCTCCACGTGGAGTGCCTC 154916 Query 552538 AAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTT 552591 | | || || || || |||||||| || ||||| || | ||||| || |||| Sbjct 154917 AGGTGGAGGTGACCTTTGATATCGACGCGAATGGCATACTCAATGTTACGGCTT 154970 >seq4811 Length=1929942 Score = 109 bits (120), Expect = 4e-18 Identities = 256/385 (66%), Gaps = 10/385 (3%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC-----TG 552264 ||||||||||||||||| |||||||| ||||| | ||||| || || || | || Sbjct 1154817 AATCCAGATGAGGCTGTGGCCTATGGAGCCGCCGTACAAGCTGCCATACTCACCGGTGTG 1154758 Query 552265 GACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTG 552324 | || | | | | | || || | | || || ||||| ||||| || || || | Sbjct 1154757 GGCA----GCTCCCAGA-TCCAGGATCTGCTTCTGGTTGATGTGACTCCGCTTTCGCTGG 1154703 Query 552325 GTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTT 552384 | | ||||||| ||| ||| | ||||| || | | || | ||| || ||||| | Sbjct 1154702 GCATCGAAACAGCTGGCGGTGTGATGACCAAGTTGGTGGAACGCAATGCTCGCATTCCCT 1154643 Query 552385 GTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAA 552444 | ||| | | | || | || || || || || | ||| || || ||||| Sbjct 1154642 GCAAACAGCAGCAGATCTTCACCACCTACAGTGACAACCAGAATGCGGTGACCATTCAGG 1154583 Query 552445 TTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAG 552504 ||| || || ||||| | || || ||||| ||| ||| || || || ||| | Sbjct 1154582 TTTACGAGGGTGAAAGGGCCATGACCAAGGATAACAATTTACTGGGCACCTTCAATCTCA 1154523 Query 552505 AAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATG 552564 || ||||| ||||| || |||||||| || || || || || | |||||| | ||| Sbjct 1154522 CTGGCATTCCACCTGCACCGCGTGGAGTGCCACAGATCGAGGTGGCCTTCGATTTAAATG 1154463 Query 552565 CCAATGGAATTTTGAATGTGACTGC 552589 || |||||||||||||||||| ||| Sbjct 1154462 CCGATGGAATTTTGAATGTGAATGC 1154438 >seq4190 Length=303630 Score = 86.0 bits (94), Expect = 5e-11 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 550329 AAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG 550388 |||| || |||||||| | || ||||| |||| || || | | |||| |||| Sbjct 36810 AAATCTCCGCTATGGTTCTGGGCAAGATGAAGGAAACCGCTGAAGCCTAT-TTGGGCAAG 36752 Query 550389 AAGTT-ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447 ||| | || |||| || | || || || || || || || || | || ||||| ||| Sbjct 36751 AAGGTCACCCATGCCGTCGTCACCGTGCCTGCCTACTTCAACGATGCCCAGCGTCAGGCT 36692 Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507 || || |||||||| |||||| || || | ||| | ||||| || || ||||| ||| Sbjct 36691 ACCAAGGATGCTGGTGTTATTGCCGGTCTGCAGGTTATGCGTATCATTAACGAACCCACT 36632 Query 550508 GCTGCTGCACTTGCATATGGACTTGATAA 550536 |||||||| |||| || || || || || Sbjct 36631 GCTGCTGCTATTGCTTACGGTCTGGACAA 36603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029034433213540