Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4475 102 6e-17 seq4563 95.1 9e-15 seq4042 84.2 2e-11 >seq4475 Length=5362458 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || || || |||||||| || ||| | || | || || Sbjct 1656720 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCG 1656779 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||| | || | ||||||||||| Sbjct 1656780 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGG 1656839 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||||||||||| || || || ||| Sbjct 1656840 ATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTTT 1656899 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| |||||||| Sbjct 1656900 CCAGTCAAGGTCTTCACAAAGATCTGCAT 1656928 >seq4563 Length=5383265 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| || || ||| | || Sbjct 1837964 AGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 1838023 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||| Sbjct 1838024 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 1838083 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || ||| | | | || || | ||||||||||| || Sbjct 1838084 TTGTCTTGGATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTG 1838143 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || || | ||||| || || || ||||| ||| Sbjct 1838144 ATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATGGTG 1838185 >seq4042 Length=640736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | ||| |||| |||||||| | || ||| || ||||||||||| || | Sbjct 502923 CGCCACCGCGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGG 502982 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | | || |||| |||| |||||| || || || |||| ||||| ||||| | || Sbjct 502983 ACAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGG 503042 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||||||||||| ||||| || || | | | || || | ||| | Sbjct 503043 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAA 503102 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || || || || || | || || ||||| |||||||| Sbjct 503103 CCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 503151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380914637319558