Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq3473 127 4e-24 seq3327 89.7 9e-13 seq3233 89.7 9e-13 seq984 89.7 9e-13 seq1655 87.8 3e-12 seq1054 84.2 4e-11 >seq3473 Length=7851 Score = 127 bits (140), Expect = 4e-24 Identities = 187/265 (71%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 113838 CTGAAGATAGGCGTGGAAGCCCAGCAGGCCCAGGCCGACCGAACGCTCCTGCGTAGCCGA 113897 ||| || ||| |||||| |||| | ||| || || || |||||||| | | ||||| Sbjct 2308 CTGCAGGAAGGAGTGGAAACCCATGACGCCAAGCCCAACTGAACGCTCGCGGGAAGCCGC 2249 Query 113898 GTAGATCGCGTAGGCCAACGCCGGCGGAGCGTTGTCGATGAACACCTGGAGGCAGTTGTC 113957 ||| ||| | || ||||||| ||| ||| || || |||| | |||||| Sbjct 2248 ATAGGCCGCCTTCTTCATTTCCGGCGGTGCGCGGTCAATAAAGTCCTGCAACACGTTGTC 2189 Query 113958 CAGCATACGCATCAGGTCTTCGATGAAGTGTGGGTCATCGACCCACTCGTCGAACTTCTC 114017 ||| | |||||| |||||| || || || || | ||| ||||| ||| || |||| Sbjct 2188 CAGAAAGAGCATCACGTCTTCAATAAACTGCGGCTTGTCGTGCCACTGGTCCCACGTCTC 2129 Query 114018 GGCGTTGACGCTCGACAGGCAGCAGACCGCCGTACGCTTCTTGCCTTGATCATCGCGCCC 114077 ||||| | ||||||||||| || ||||| |||| |||||| |||| ||| ||| Sbjct 2128 AAGGTTGAGGGAGGACAGGCAGCACACAGCCGTCCGCTGCTTGCCGTGATGGTCGATCCC 2069 Query 114078 GGTCGCCAGCGTGATCTCGGTGCAG 114102 ||||| ||||||||| || | |||| Sbjct 2068 GGTCGGCAGCGTGATTTCCGAGCAG 2044 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/141 (76%), Gaps = 6/141 (4%) Strand=Plus/Minus Query 115492 CTGGACAGCCAGCCGGTTTCGGTCCAGTGATCGAAGATGCCTTCACGGCTGTC-TTCGG- 115549 |||| ||||||| | ||||| ||||| | ||| |||||||| | ||||| |||| Sbjct 1548 CTGGCCAGCCAGACATTTTCGTTCCAGAGGCCGACAATGCCTTCCAGACTGTCATTCGCT 1489 Query 115550 -CGGTCGAGAGGAAGCAGGAAATAGGCAAGCCGCGCGACGTGCCACCGTTGCTGAGCAAC 115608 | || |||||||||||||| |||| |||||||| |||||| |||||| ||| | | Sbjct 1488 TCATTC---AGGAAGCAGGAAATCGGCAGGCCGCGCGTCGTGCCGCCGTTGGAGAGGACC 1432 Query 115609 GGAGTGGCGAACATGAACCAG 115629 || || ||| |||||||||| Sbjct 1431 GGCGTTGCGGGCATGAACCAG 1411 >seq3327 Length=1469 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 269 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 328 Query 133023 CCCTCCCCCGCATCCACAA 133041 || |||||||| ||| || Sbjct 329 CCTGCCCCCGCAACCAAAA 347 >seq3233 Length=24572 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 388 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 447 Query 133023 CCCTCCCCCGCATCCACAA 133041 || |||||||| ||| || Sbjct 448 CCTGCCCCCGCAACCAAAA 466 >seq984 Length=7728 Score = 89.7 bits (98), Expect = 9e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 7315 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 7256 Query 133023 CCCTCCCCCGCATCCAC 133039 || |||||||| |||| Sbjct 7255 CCTGCCCCCGCAACCAC 7239 >seq1655 Length=5713 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 1980 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 1921 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 1920 CCTGCCCCCGCAACCA 1905 >seq1054 Length=1221 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||| Sbjct 377 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 436 Query 133023 CCCTCCCCCGCATCCA 133038 || ||||||| ||| Sbjct 437 CCTATCCCCGCAACCA 452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895711019242320