Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4471 293 4e-74 >seq4471 Length=3711889 Score = 293 bits (324), Expect = 4e-74 Identities = 564/825 (68%), Gaps = 15/825 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | ||||| |||||||||||||| || |||| |||||| |||| Sbjct 604336 CTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTC 604277 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 |||||| ||| ||||| ||||| || | | | | || | || |||||| Sbjct 604276 CATGAAATTGAAAGGGTTCTTGGTGTTGTAGATCTTTCCAACACCAAGCTCCACCAGCAA 604217 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | || ||||| |||||||||| | ||||| ||| | |||||||| || | | Sbjct 604216 ACGGTCTGCGACAAACTCGATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAGTT 604157 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||| | || | ||| || ||||||| ||| || ||| || || | | ||||| Sbjct 604156 TACGGGAAGGGCATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATAATCTC 604097 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGC-GCA---GGTGCTTGGCATAGAGCATGCAGG 48134 | | ||| |||| | || || || ||| |||||| | | | || | || Sbjct 604096 GATGATGCG---CTCTC-GCTTTGGTCGCTGCACGAGGTGCTGGA---ACATCAAGACGG 604044 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| | ||||||||||||||||||| || || |||||||||| || || | Sbjct 604043 CAAAGTCGCAGTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGTCAGGCCCG 603984 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | | || ||||||||||| | ||||| ||| |||||||||| Sbjct 603983 GCATCAGGCCACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAAGAAGATGC 603924 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || || || ||| | | | |||||| ||| || |||| |||||||| Sbjct 603923 CCTCTACGGCGGCAAAGGCGATAATTCGCTCTCCAAAATTGGCTGACTTGGATGAGATCC 603864 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 |||||||||||||||| ||||| ||| | ||||||||||| ||||| ||| | Sbjct 603863 AGGAAAGCGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATCGTCTCGATGGCATTGAACA 603804 Query 48375 GCTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | | || | || | |||| || | || || || ||| ||||| || Sbjct 603803 GGTACTCCCGCTGA--TGCGGATCTCGGATGTATGTGTCGATCAGGACACTATACATTTC 603746 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 |||||||| || || || ||||||||||| ||||||||| | |||||| | ||| Sbjct 603745 GGAGTGCACGTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGCCTCAGTGATCTG 603686 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 || || | |||| ||| | ||| ||||| || || || ||||| ||||| ||||| Sbjct 603685 AACCTCCTGGCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATCGGAAGCGGCAAA 603626 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 |||||| || || ||| | ||| || ||||||| || | || || |||| || Sbjct 603625 GAAGGCCAGCACGTGTGAGATGAAGTGACGCTCGTCGTCCTTTAGGCGATGCCAGTCCGT 603566 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | || ||| ||| |||||||| ||||||||||||||||| || Sbjct 603565 CAGATCCTTGGACAGATCCACTTCCTCCACAGTCCAGAAGGAAGC 603521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931475207984640