Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4453 152 3e-31 seq4807 129 4e-24 seq4563 127 1e-23 seq980 111 1e-18 seq4624 104 2e-16 >seq4453 Length=172547 Score = 152 bits (168), Expect = 3e-31 Identities = 368/548 (67%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| || || | || | || |||| || || | Sbjct 159624 TTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGAGTGTTCCAGCATGGAAAGGTCG 159565 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || ||||| ||||| |||||| | || || ||||| |||||| | || || || | Sbjct 159564 AGATCATCGCCAACGACCAGGGTAATCGTACCACTCCATCCTATGTTGCCTTCACCGATA 159505 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || |||||||| || || | || | || || || | || | Sbjct 159504 CGGAGCGTCTGATCGGAGATGCCGCCAAGAACCAGGTGGCGATGAACCCGACCCAGACGA 159445 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || || || || | |||||||||| || || || ||| || |||| || ||||| | Sbjct 159444 TCTTCGACGCCAAGCGCCTGATTGGTCGCAAGTTCGACGATTCCGCTGTGCAGTCTGACA 159385 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || ||||| | | | || || || || | || || | | | Sbjct 159384 TGAAGCACTGGCCCTTCGAGGTGGTCAGCGCTGACGGCAAGCCCAAGATTGAGGTGACCT 159325 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || |||| || || ||||| | |||| Sbjct 159324 ACAAGGACGAG-AAGAAGACCTTCTTC-CCCGAGGAAATCTCCTCGATGGTGCTCACCAA 159267 Query 474691 AATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | ||||| ||| | || | ||| ||||| || || | || || || || Sbjct 159266 GATGAAGGAGACCGCTGAG-GCCTA-CCTGGGCAAGACTGTGACCAACGCTGTCATCACC 159209 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || ||||| || || || || ||||| ||||| || || || ||||| |||| || || Sbjct 159208 GTGCCAGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAGGATGCCGGAACCATCGCT 159149 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| || || | ||||| || || || || || || || || |||| || ||| | Sbjct 159148 GGTCTGAACGTGCTGCGTATCATCAACGAGCCCACGGCCGCTGCTATTGCATACGGTTTG 159089 Query 474869 GATAAGAA 474876 || ||||| Sbjct 159088 GACAAGAA 159081 >seq4807 Length=1189310 Score = 129 bits (142), Expect = 4e-24 Identities = 261/383 (68%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||| ||||| ||||| || ||||||||||| |||||||||| ||| | || || | | Sbjct 510836 AATCCGGATGAGGCTGTCGCCTATGGAGCTGCCATCCAAGCAGCCATTCTGTCGGG-CGA 510894 Query 475853 TCAGACGAG--AAACTAAATAA-TATTGTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909 ||| || | | ||| | || || || || || || | ||||| || || || Sbjct 510895 CGAGAGTAGCCAGATTAAGGACGTACTG--CTCGTAGATGTGGCCCCACTCTCGTTGGGC 510952 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 ||||||| | ||||| | |||||||| || ||||| | || | | |||||||| Sbjct 510953 ATTGAAACTGCCGGAGGCGTGATGACTAAACTGATTGAGCGCAACAGCCGGATCCCATGT 511012 Query 475970 AAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATC 476029 ||| | || || ||| | ||||| |||| || || | | || ||||| || | Sbjct 511013 AAACAGTCTAAGACATTCACTACTTACGCTGACAACCAGCCGGCGGTGACCATTCAGGTG 511072 Query 476030 TTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089 ||||| || ||| | | ||||| || || ||| || || | |||||||| Sbjct 511073 TTTGAGGGCGAACGCGCTCTAACTAAGGACAACAACGTTCTGGGCAACTTTAATCTGACT 511132 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| ||||| ||||||||||| || | || || || || || || | || || Sbjct 511133 GGTATTCCACCTGCCCCCAGAGGAGTGCCCAAGATCGACGTCACCTTCGACTTGGACGCT 511192 Query 476150 AATGGTATTCTTAATGTTACTGC 476172 |||||||| || || || || || Sbjct 511193 AATGGTATCCTGAACGTAACAGC 511215 >seq4563 Length=5383265 Score = 127 bits (140), Expect = 1e-23 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| ||||| || || | || ||||| ||| |||| || |||||| |||| || Sbjct 4507146 ACGCAGACGCAGCACCAAGTGCAAAGTGGACT--CTTTCTGAATATTATAGTCAGAGAGG 4507203 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | |||||| || ||||| ||||| || || ||||| || ||||| ||||||||| Sbjct 4507204 GTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATT 4507263 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 ||||| ||||| |||||||| ||||||| ||| |||||||| | || ||| Sbjct 4507264 CCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCA 4507323 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| ||||||||||| || || Sbjct 4507324 AGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 4507364 >seq980 Length=21089 Score = 111 bits (122), Expect = 1e-18 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 474680 GTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGC 474738 ||| | | |||||||||| ||||||| ||| | || ||||| || |||| || | || Sbjct 3565 GTTCTGGGCAAAATGAAAGAAACCGCCGAGG-CGTACCTTGGTGAAAAAGTGACGCAGGC 3623 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || || || ||||| || || ||||| ||| | || ||||| || || |||||||| || Sbjct 3624 CGTGATCACGGTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCGACCAAAGATGCAGG 3683 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | ||||| || ||| | || | ||||| || || ||||| || || || || ||||| Sbjct 3684 CCGTATTGCTGGCCTTGAAGTCCTGCGTATCATCAACGAACCGACGGCCGCTGCCCTTGC 3743 Query 474859 TTATGGTCTTGATAAGAA 474876 |||||| | || ||||| Sbjct 3744 TTATGGCATGGAAAAGAA 3761 >seq4624 Length=699010 Score = 104 bits (114), Expect = 2e-16 Identities = 255/384 (66%), Gaps = 6/384 (2%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGT--- 475849 |||||||| || || || || || ||||| || ||||| || ||||| | | || Sbjct 539961 AATCCTGACGAGGCAGTGGCCTACGGAGCCGCAGTCCAGGCCGCTATCCTTACTGGAGAC 539902 Query 475850 CAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909 ||| || | ||| | || | | | | || || ||||| ||||||| ||| | || Sbjct 539901 CAA--AGTGGCAAAATTCAAGA-TGTGCTGCTGGTGGACGTGGCTCCACTCTCACTGGGA 539845 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 |||| || | ||| ||| | ||||| || || || || | || | || || ||| Sbjct 539844 ATTGAGACCGCTGGCGGGGTCATGACCAAGCTGATCGAGCGCAACTGCCGGATACCTTGC 539785 Query 475970 AAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATC 476029 || | | || || || || || ||||||||||| | || |||| ||| | Sbjct 539784 AAGCAGACCAAGACGTTCTCAACGTACTCTGATAATCAGTCCGGAGTCTCCATTCAAGTA 539725 Query 476030 TTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089 | |||||| ||| | || || || ||||| ||| ||| ||||||||| |||| Sbjct 539724 TATGAAGGCGAACGTGCGTTGACCAAGGATAACAACGCACTGGGAACTTTTGATCTGTCT 539665 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| || ||||| || || || || ||||| || ||||| || || || || || Sbjct 539664 GGCATTCCACCAGCTCCAAGGGGTGTGCCCCAAATAGAGGTTACCTTCGACATGGACGCT 539605 Query 476150 AATGGTATTCTTAATGTTACTGCT 476173 ||||| || | || ||| | ||| Sbjct 539604 AATGGAATCTTGAACGTTGCCGCT 539581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267967042062008