Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4563 196 1e-44 seq3190 123 7e-23 >seq4563 Length=5383265 Score = 196 bits (216), Expect = 1e-44 Identities = 733/1138 (64%), Gaps = 25/1138 (2%) Strand=Plus/Minus Query 155400 AATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTG 155459 |||| || || || ||||||||||| || || || ||||||||||| ||||| | | Sbjct 4594245 AATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAAATTGGACTTC 4594186 Query 155460 CTTGTCTTCTTG-TTTGGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAAC 155515 |||| | ||| | || ||||| || | ||| || || || || | |||| ||||| Sbjct 4594185 CTTG-CCTCTGGCAGCGGATAAAAGTTGATATCGATTATCTTGTTGAGATTTCTGGTAAC 4594127 Query 155516 CAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAA 155575 | |||||| || || || ||| | || |||| || ||| | ||||| Sbjct 4594126 C---GTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTATGTCTTTTCCGGTGTGACAAA 4594070 Query 155576 CATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTC 155635 ||| |||| |||| || |||| ||||| || ||| |||| | | | ||| || Sbjct 4594069 CATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGAGTACTC 4594010 Query 155636 TACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTT 155695 ||||| || ||||| |||| | || |||||||| | ||||| ||||||| || Sbjct 4594009 GACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTTACTCTT 4593950 Query 155696 ACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAG 155755 ||||| || ||||||||| | || || || || |||| || |||| ||||| || | Sbjct 4593949 CCTGTTGCAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGCTTCAAT 4593890 Query 155756 AATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATA 155815 ||| | ||| | | | || |||| | |||| | ||| || |||||| Sbjct 4593889 AATGGCGAACCATAAGGATTGAGCCTTAACTGTTCGGTTGGCACGGCCCTCTTGCTCATA 4593830 Query 155816 TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATC 155875 ||||| ||| | | || | || || || | ||| || |||||||| || | Sbjct 4593829 TTTCACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGGGCATTTGTG 4593770 Query 155876 GGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGC 155935 ||||| | || |||||| | ||| | |||||| | ||| || | |||| Sbjct 4593769 CGGGCACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAGATCAGGTAT 4593710 Query 155936 CCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTA 155994 ||| | || || ||||| || | || ||| || | ||| ||| || ||| | Sbjct 4593709 CCACAAGGCGTAAAAAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGTG-TTTTTCTTGA 4593651 Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCAT 156054 | || | ||||| | ||||| || |||||||| || |||||||| || Sbjct 4593650 GTTCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGCAAAGGCTCCTG 4593591 Query 156055 TCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111 | ||| ||| |||||||| ||||| || ||| ||||||||||| | ||||| | Sbjct 4593590 GACGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTATTGAAGACCCTCAGCATGG 4593531 Query 156112 GAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGA---ACCAGATGAGCGAA 156168 ||| | ||||||||||| ||||| ||||||| |||| ||| ||| || || | Sbjct 4593530 GAACCAGTCCATTGGAAGTTCCATTTGTTCCGC--ATAT-CGAAGTACCCTTTGCTCGGA 4593474 Query 156169 CATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTA 156228 | ||||| || ||||||||| ||||| | |||||||||| || |||| || | Sbjct 4593473 TACAATGAACATTTAGTCCAATGCCACCAGCAGATTTAGAAATCATGGCACATTGCTCCA 4593414 Query 156229 CAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTA 156288 ||| || ||||| ||||| || || || || ||| | || || | || ||| || Sbjct 4593413 CAGACTTAAAAATGCCTTCGATGGAGTCGGCTGTCATGGTTAAAAGGAAACATGAAGATA 4593354 Query 156289 ATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTAT 156348 || || || ||| | || || || || |||| ||||||| | || ||| | Sbjct 4593353 GCTGCGGCCGATTTGTGGCTGCTGCAAAAAGCGTTGGTGATGCATGAGTGAAGTACCGCT 4593294 Query 156349 TAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAG 156408 |||| | || || || || | || | || |||||| || | ||| | Sbjct 4593293 CTGACAAAAGATTATACGTTTCTACGGCCGCGTCGATATCTTCCCCGTGGATTCCGATCG 4593234 Query 156409 AGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGC---AGAA 156465 || | |||| ||||||| || || || || | ||| || | ||| | | | Sbjct 4593233 CAACGCGCATCAACATATGTTGCGGCCGTTCAGCGATCTTACCGT---TTCTCTTTAACA 4593177 Query 156466 GGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTA 156523 || | ||||| || ||||||||||||||||||| | || ||| || || | ||| Sbjct 4593176 AATAAGAACGTTCGAGGGTTTTAAACCCGAAATAATTATACCCAAAGTCGCGATCGTA 4593119 >seq3190 Length=1051349 Score = 123 bits (136), Expect = 7e-23 Identities = 187/263 (71%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||| |||||||| ||||| ||| || || |||||||| ||| Sbjct 633924 TCCATAGCCTTTATAAGACGTCGCTGAATGTAACCGGTTTCAGCAGTCTTTACAGCAGTA 633983 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| ||||| |||||||||||||||| ||||| | | ||| ||| || || Sbjct 633984 TCAATAAGACCCTCACGACCACCCATAGCGTGGAAATAAAACTCCGAGGGTGTCAGGCCG 634043 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 | | | | ||| |||| ||||||||||| | ||| || || ||||||| ||| | Sbjct 634044 GCCAGATACGAGTTCTCCACGAAACCACGGGACTCAGGACCGTAATCGTC---TTTGATG 634100 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || || || | || | || || ||||| || || || |||||||||||| Sbjct 634101 AAATGGGGAAGAGTGCGCTTGCGGAAACCATACGGGATTCGTTTACCCTCAACGTTCTGC 634160 Query 302812 TGTCCCAGGCACGAAATCATCTG 302834 || |||| || | ||| | ||| Sbjct 634161 TGGCCCACACAAGCAATAACCTG 634183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471724329998802