Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4286 150 2e-30 seq4471 114 2e-19 seq4475 95.1 1e-13 seq4483 89.7 6e-12 >seq4286 Length=1223802 Score = 150 bits (166), Expect = 2e-30 Identities = 150/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATC-TCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCC 1592164 |||||||||||||||||||| || || ||||| || || | || || ||| Sbjct 338680 AGAAGCGCACCGACGACATCATCTCC-TGGGATGCCGATTTCCTGAAAGTGGATCAGGGT 338622 Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 ||| | |||||| | ||||| || |||||||| || ||||||||| ||||| || || Sbjct 338621 ACCTTGTTTGAGCTCATCCTGGCTGCCAACTATCTGGACATCAAGGGCCTGCTGGAGCTC 338562 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 ||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||| Sbjct 338561 ACCTGCAAAACTGTGGCTAACATGATCAAGGGCAAGACTCCCGAGGAGATCCGCAAGACC 338502 Query 1592285 TTTAACATCAAG 1592296 |||||||| ||| Sbjct 338501 TTTAACATTAAG 338490 >seq4471 Length=3711889 Score = 114 bits (126), Expect = 2e-19 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 |||||||||||| | |||||| ||||| ||||| || || |||||||||| |||||| Sbjct 604333 GTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCAT 604274 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| ||||| || |||||| |||| | || ||| | | |||| || Sbjct 604273 GAAATTGAAAGGGTTCTTGGTGTTGTAGATCTTTCCAACACCAAGCTCCACCAGCAAACG 604214 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||| ||||||||||||||||||||| |||| ||| || ||||||||||| Sbjct 604213 GTCTGCGACAAACTCGATGTACTGGGACATCAGGTCGCAATTCATGCCGAT 604163 Score = 98.7 bits (108), Expect = 1e-14 Identities = 201/296 (68%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 869155 GACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGC 869214 |||||||||| | | ||| | |||||||| || || | ||||||| || | Sbjct 604048 GACGGCAAAGTCG---CAGTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGT 603992 Query 869215 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAA 869274 ||||| ||||| ||||| || ||||| ||||| || || | | ||| ||||| || Sbjct 603991 CAGGCCCGGCATCAGGCCACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAA 603932 Query 869275 AAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC 869334 ||||||||||| |||||||||||| |||| | ||||| |||| || | | | | Sbjct 603931 GAAGATGCCCTCTACGGCGGCAAAGGCGATAATTCGCTCTCCAAAATTG--GCTGACTTG 603874 Query 869335 CTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGAT 869394 || |||||| | ||||||||| ||||| | | || | ||||| ||| ||||| Sbjct 603873 GATG-AGATCCAGGAAAGCGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATCGTCTCGAT 603815 Query 869395 GGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGA 869450 ||| || |||| ||| | ||| || || || ||||||||||||| Sbjct 603814 GGCATTGAACAGGTACTCCCGCTGATGCGGATCTCGGATGTATGTGTCGATCAGGA 603759 Score = 95.1 bits (104), Expect = 1e-13 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||| || || || || || | |||||| || ||| | | || || ||| || Sbjct 436790 AGAAGCGAACGGATGATATATCATCATGGGACGCCGATTTTCTCAAAGTGGACCAGGGCA 436849 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 |||| || ||| | ||||| || || ||||| | |||| || ||| || || | Sbjct 436850 CCCTGTTCGAGCTCATCCTGGCTGCAAACTATTTGAACATACAGGGTCTACTGGACGTCA 436909 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| | |||||||| ||||| |||||||||||||| |||| |||||| | |||| Sbjct 436910 CTTGCAAAACGGTGGCCAATATGATTAAGGGCAAGTCGCCGCAGGACATCCGCGACACCT 436969 Query 1592286 TTAACATCAA 1592295 || |||||| Sbjct 436970 TTGCCATCAA 436979 Score = 87.8 bits (96), Expect = 2e-11 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| | ||| || || ||||||||||| ||||| ||| | |||| | | || Sbjct 603744 GAGTGCACGTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGCCTCAGTGATCTGA 603685 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||| | || || | ||||||||||| |||||| || ||| ||||| || Sbjct 603684 ACCTCCTGGCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATCGGAAGCGGCAAAG 603625 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTC 869790 || ||||| ||||| ||| ||||| ||||||||||| Sbjct 603624 AAGGCCAGCACGTGTGAGATGAAGTGACGCTCGTCGTC 603587 >seq4475 Length=5362458 Score = 95.1 bits (104), Expect = 1e-13 Identities = 232/348 (67%), Gaps = 4/348 (1%) Strand=Plus/Minus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954 |||||| || ||| |||||||||||| | ||| ||| || || | | ||| |||| Sbjct 1903030 GGGTCCTCCTGGCGTGGGCAAGACCACCACCATTCAGTGCCTCGCAAGGATTCTCCTGGG 1902971 Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014 | | ||||| ||||||||||| || || || | ||||| || | || || Sbjct 1902970 GGACAGTTATAAAGAGGCGGTGCTCGAACTTAATGCCTCCAATGAGCGAGGAATTGATGT 1902911 Query 1574015 CGTGCGCAAGATCATCAAGCACCACGC-CTCCAAGAGGATCGACCT-GCCGCCCGGACGC 1574072 ||||| || | || || || | ||| ||| ||| | ||||| ||| | Sbjct 1902910 GGTGCGGAATAAGATAAAAATGTTTGCACAGCAAAAGGT--GACATTGCCGCGTGGAAGG 1902853 Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132 || ||| | | || || || ||||| ||| || | || || ||||||||||| || Sbjct 1902852 CATAAGATTGTTATTCTGGATGAGGCGGACAGCATGACAGAGGGTGCCCAGCAGGCTTTG 1902793 Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192 || ||||||||||| ||| ||| || ||| | ||||| ||||| |||||||| Sbjct 1902792 CGTCGCACCATGGAAATCTACAGCAATACCACGAGATTTGCTCTGGCATGCAACACCAGT 1902733 Query 1574193 TCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCttt 1574240 || | |||| || || | ||| |||||||||||| |||| ||| Sbjct 1902732 GAGAAGATCATAGAACCCATACAATCTCGCTGCGCCATGTTGCGATTT 1902685 >seq4483 Length=2900833 Score = 89.7 bits (98), Expect = 6e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1592156 GAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTG 1592215 || ||| ||||||||| ||| | ||||| || |||||||| | |||||| | || Sbjct 306874 GATCAGGGCACCCTCTTCGAGCTCATCCTGGCGGCCAACTATTTGGACATCCGGAACCTA 306933 Query 1592216 CTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATC 1592275 || || | | |||| | | |||||||||||||| |||||| | || | |||||||| Sbjct 306934 CTGAATGTCGCCTGCATGACGGTGGCCAACATGATAAAGGGCCACACGGCTGAGGAGATT 306993 Query 1592276 CGCAAGACCTTTAACATCA 1592294 ||| ||||||| |||||| Sbjct 306994 CGCCAGACCTTCCACATCA 307012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106733308077882