Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4811 147 2e-29 seq4190 111 1e-18 seq4453 107 1e-17 seq980 96.9 3e-14 >seq4811 Length=1929942 Score = 147 bits (162), Expect = 2e-29 Identities = 276/403 (68%), Gaps = 7/403 (2%) Strand=Plus/Plus Query 282083 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGA--TTCAAAT 282140 || || | |||||| |||||||| | | || ||| ||| | || ||| || | || Sbjct 1155095 TTGGCCCTTTCACAGGCTGTCCTCAAACGTCTTAAAGCTCTGGC--ATTACCCTTGATAT 1155152 Query 282141 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 282200 | | || | ||||||||||| || ||| || | | || || || || ||||||| Sbjct 1155153 CGGACTTGTGCTTTCTCTTGAACTCCTCAGCAAAGTGATTGACTAGTCGGTTGTCAAAAT 1155212 Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT---CCATCTT 282257 ||||||| ||||| | ||| | || | ||| || | || | |||||| || || | Sbjct 1155213 CTTCACCACCCAAGTGAGTGTCACCAGCCGTGGCCTTCACCTCGAAAAGGTAACCCTCGT 1155272 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 | | | ||||| | |||||| |||||| ||||||| ||| || || || ||||| Sbjct 1155273 CGATGGTCAAAATGGAGACATCAAAGGTTCCGCCACCCAGATCGAAGATGAGGACATTGC 1155332 Query 282318 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377 || | |||| ||||| | || || || |||||||| ||||| |||||||||| Sbjct 1155333 GCTCCCCCTTCAGGTTCTTATCTAATCCGTAGGCCAAAGCAGCGGCAGTGGGTTCATTAA 1155392 Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437 | || ||||| ||||| | || ||||| ||| ||||| || || || || | ||| Sbjct 1155393 TGATCCTCAACACATTCAATCCGGCAATGGATCCCGCATCCTTGGTAGCCTGCCGTTGGC 1155452 Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC 282480 |||||| ||||| || || || || || || || || |||| Sbjct 1155453 TATCGTTGAAATACGCCGGCACTGTGATCACTGCGTCCTTTAC 1155495 >seq4190 Length=303630 Score = 111 bits (122), Expect = 1e-18 Identities = 248/369 (67%), Gaps = 5/369 (1%) Strand=Plus/Plus Query 282184 AAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTG 282243 || ||| | ||| || || ||||| ||||| | ||||| || || || || | Sbjct 36455 AACACGCTGATCGAAGTCCTCACCACCCAAATGAGTATCACCGTTGGTGGCCACCACCTC 36514 Query 282244 GAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAA 282303 ||||| ||| | || | | || ||| | ||||| ||| || || |||| ||| || Sbjct 36515 GAAAACTCCGTTATCGATGGTCAGAAGGGAGACATCGAAGGTACCGCCGCCCAAATCGAA 36574 Query 282304 AATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGC 282363 | || || ||| | || | ||| || || || ||||| || |||| ||||||||| Sbjct 36575 CACCAGCACGTTCTTCTC---GCCTTCCTTCTTGTCCAGACCGTAAGCAATAGCAGCAGC 36631 Query 282364 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 282423 ||| ||||| ||||| || | || ||| | ||||| ||||| || ||||| || || Sbjct 36632 AGTGGGTTCGTTAATGATACGCATAACCTGCAGACCGGCAATAACACCAGCATCCTTGGT 36691 Query 282424 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTT 282482 || || | || | |||||| || || ||||| || || | ||||||| || | ||| Sbjct 36692 AGCCTGACGCTGGGCATCGTTGAAGTAGGCAGGCACGGTGACGACGGCATGGGTGACCTT 36751 Query 282483 CTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 282542 ||| |||| ||| || || |||| ||||| || | | || ||| | || |||| Sbjct 36752 CTTGCCCAA-ATAGGCTTCAGCGGTTTCCTTCATCTTGCCCAGAACCATAGCGGAGATTT 36810 Query 282543 GTTCTGGAG 282551 || |||| Sbjct 36811 CCTCAGGAG 36819 >seq4453 Length=172547 Score = 107 bits (118), Expect = 1e-17 Identities = 546/866 (63%), Gaps = 6/866 (1%) Strand=Plus/Plus Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 |||| | || || |||| ||| || | ||||| | | || || || || || || | Sbjct 158767 AATCGGTACCCTCAAACAGAGAGTCGATCTCAATGCTGGCCTGGGTGGAGGACGACAGGG 158826 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 282135 ||| || ||||| || || || || | || | || | ||| ||| ||| | | Sbjct 158827 TACGCTTTGCACGCTCGCAGGCGGTGCGCAGACGACGCAGGGCAC--GCTTGTTGGTGGT 158884 Query 282136 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195 |||||| | || | || | |||||| || | || | || |||||||| || || Sbjct 158885 CAAATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACGAAGTGCGTAACAAGACGGTTGTC 158944 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||| || ||||| ||||| | || | ||| | || | | || | || | || || Sbjct 158945 AAAGTCCTCACCACCCAAATGCGTGTCTCCGGCAGTGGACTTAACCTCAAAGATACCGTC 159004 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 || | |||| | | ||||| ||| || || |||| ||| || || || || || Sbjct 159005 ATCGATCGACAGGATGGACACATCGAAGGTACCGCCGCCCAGATCGAAGATGAGCACGTT 159064 Query 282316 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375 ||| | || || || | ||| || |||| |||||| || || || || || Sbjct 159065 GCGCTCTCCAACAGCCTTCTTGTCCAAACCGTATGCAATAGCAGCGGCCGTGGGCTCGTT 159124 Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435 || || | || || || |||||||| || |||| ||||| || || || || | || Sbjct 159125 GATGATACGCAGCACGTTCAGACCAGCGATGGTTCCGGCATCCTTGGTCGCCTGACGCTG 159184 Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 || ||||| || || || || || || || || || | || || || || | || Sbjct 159185 AGAGTCGTTGAAGTAGGCTGGCACGGTGATGACAGCGTTGGTCACAGTCTTGCCCAGGTA 159244 Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555 || || || | ||||| || | | | ||| || || |||| || || ||| | Sbjct 159245 GGCCTCAGCGGTCTCCTTCATCTTGGTGAGCACCATCGAGGAGATTTCCTCGGG-GAAGA 159303 Query 282556 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614 | ||| || | | || | || |||| | || || || | | | | Sbjct 159304 AGGTCTTCTTCTCGTCCTTGTAGGTCACCTCAATCTTGGGCTTGCCGTCAGCGCTGACCA 159363 Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674 | | || ||||| | ||||| || || || ||| || | || | | ||||| Sbjct 159364 CCTCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCGGAATCGTCGAACTTGCGACCAA 159423 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734 | | || || || || || || || | ||| || || | || | || | ||||| | Sbjct 159424 TCAGGCGCTTGGCGTCGAAGATCGTCTGGGTCGGGTTCATCGCCACCTGGTTCTTGGCGG 159483 Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 ||||||| |||||| | || || || || || | |||||| |||||||| || ||||||| Sbjct 159484 CATCTCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGAGTGGTACGATTAC 159543 Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854 | || || || || || || || || || |||| || | || || || || | | Sbjct 159544 CCTGGTCGTTGGCGATGATCTCGACCTTTCCATGCTGGAACACTCCCACGCACGAGTAGG 159603 Query 282855 TTGTTCCTAAATCAATACCAATAGCA 282880 | || || ||||||||||||| |||| Sbjct 159604 TGGTGCCCAAATCAATACCAACAGCA 159629 >seq980 Length=21089 Score = 96.9 bits (106), Expect = 3e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| ||||| || || ||||| || || || | || || | ||| |||||| Sbjct 3749 CCATAAGCAAGGGCAGCGGCCGTCGGTTCGTTGATGATACGCAGGACTTCAAGGCCAGCA 3690 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | ||||||||||| || || || | || | ||||||||| || || ||||| || Sbjct 3689 ATACGGCCTGCATCTTTGGTCGCCTGACGCTGGGCATCGTTAAAGTAAGCCGGAACCGTG 3630 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 || ||||| | || |||| || |||| || || || |||| ||||||||| Sbjct 3629 ATCACGGCCTGCGTCACTTTTTCACCAAGGTACGCCTCGGCGGTTTCTTTCATTTT 3574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740387572301796