Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4563 178 3e-39 seq4475 174 3e-38 seq4681 102 2e-16 >seq4563 Length=5383265 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || |||||| || ||||||| ||| || |||||||| |||||||| ||||| Sbjct 4507140 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGA 4507199 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || || || ||||| ||||| || | || ||||||||||| Sbjct 4507200 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 4507259 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| || || |||||||| ||||| |||||||| || ||||| |||||| || Sbjct 4507260 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 4507319 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| || | ||||| || || |||||||| Sbjct 4507320 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 4507367 >seq4475 Length=5362458 Score = 174 bits (192), Expect = 3e-38 Identities = 185/243 (76%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | |||||| ||||| ||||| ||||| || || ||||| || || ||||| | Sbjct 1656700 TACCTCCACGCAAACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGG 1656759 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || || || ||||| || | || |||||||||| Sbjct 1656760 AAAGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAG 1656819 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| ||||| || || ||||| ||||| || || ||| || | Sbjct 1656820 GGATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCA 1656879 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTT 82821 | |||| ||| || ||||| || ||||| ||||| ||||| ||||||||| || ||| | Sbjct 1656880 CCTCCAGAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATT-TTGGATTAT 1656938 Query 82822 TCT 82824 ||| Sbjct 1656939 TCT 1656941 >seq4681 Length=7884553 Score = 102 bits (112), Expect = 2e-16 Identities = 197/288 (68%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 198339 CTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGA 198398 || ||||| | ||||| | || || | | || || || ||||| | ||| | | Sbjct 5741616 CTGTGGAACTCGGCGCAACTGCAACTGGTGCGCGAGGGCAAGATGCACGGCTTTCTGCGC 5741675 Query 198399 ATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTAT 198458 ||||||||||| ||||| || || || ||||| || || ||||| || || ||| Sbjct 5741676 ATGTACTGGGCAAAAAAAATTCTCGAGTGGACTGCCACTCCTGAAGAGGCGCTGGAGTAT 5741735 Query 198459 AGTATCTATCTAAACAATAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTAGG 198517 || | |||||| |||||||| || || || ||| || |||||||| || || || Sbjct 5741736 GCGATATTACTAAACGATAAGTACAGCCTCGATGG-ACGTGACCCTAACGGTTATGTTGG 5741794 Query 198518 TTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGG 198577 ||||||||||||||| |||| | || || | ||||| || | ||||| || || Sbjct 5741795 GTGTATGTGGTCTATTGGCGGTGTGCACGACATGGGTTGGAAGGAGCGCCCTATTTTCGG 5741854 Query 198578 GAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGT 198625 ||| | | || ||||| ||| |||| | | | ||| |||||||| Sbjct 5741855 AAAGGTCCGGTACATGAACTATCAGGGGTGTCGGCGAAAGTTTGATGT 5741902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981764980996694