Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4563 187 2e-42 seq4475 141 9e-29 seq4471 131 2e-25 >seq4563 Length=5383265 Score = 187 bits (206), Expect = 2e-42 Identities = 610/938 (65%), Gaps = 21/938 (2%) Strand=Plus/Minus Query 148257 TGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAAC 148316 || || |||||||| || ||||| | || || | | ||| | || | ||| || Sbjct 4594626 TGGTTAACCACCTGGAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATAC 4594567 Query 148317 GGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCT 148376 || || || || ||||||||||||| |||||| || || | ||| || ||||| || Sbjct 4594566 GGCTCGAAAGATTCGTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCA 4594507 Query 148377 ACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCC 148436 |||||||| ||||| || | |||| | || ||||| ||| || ||||||| Sbjct 4594506 ACCAGCAGGGAGTTCCGGACACCGTGCTTCTTTATCGACTCCTTTAGCTTTTGCCAGTCC 4594447 Query 148437 CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGG 148496 ||||| || ||| || ||||||||||||||||| ||| || ||| | ||| Sbjct 4594446 CAGAGGTTCGTCGGAACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGG 4594387 Query 148497 CTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGC 148556 || ||||| || | ||| || || | | || | ||| || || || || | Sbjct 4594386 CTTCCCTCATAAGTTTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCAAA 4594327 Query 148557 GCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCG 148616 || || ||||||||||| ||| || ||| || | || ||| || ||||| Sbjct 4594326 GCCCCATAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGGCTCGCTTCATCACTTTCA 4594267 Query 148617 TACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGC 148676 || || | |||| | | || || || |||| |||||| || || | ||| | ||| Sbjct 4594266 TATGGGAATCGCATGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGG 4594207 Query 148677 CGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGCGGATAGTGGTTGCGGTCGATGAT 148735 || || | | ||||| | || |||| | |||||||| |||| ||||| || Sbjct 4594206 CGATGCCTCAAATTGGACTTCCTTGC-CTCTGGCAGCGGATAAAAGTTGATATCGATTAT 4594148 Query 148736 CTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTACTT 148795 ||||| ||||| | ||| ||| || | | || || |||||||| | Sbjct 4594147 CTTGTTGAGATTTCTGGTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTA--T 4594090 Query 148796 GTCATCTACGATG-------CATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCG 148848 ||| | | || || ||| ||| | || || || || | || || || || Sbjct 4594089 GTCTTTTCCGGTGTGACAAACAT--GTTAAGAGCAATGGATGCCAAGTTACAAACTGCAA 4594032 Query 148849 TCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGC 148908 |||||||||||| | |||||| || || || | ||||| || |||||||| || || Sbjct 4594031 TCTCATCCGGGGAGGAGTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGC 4593972 Query 148909 CCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGC 148968 | || |||| || || ||||| |||||||| || |||||| | ||||| ||||| | Sbjct 4593971 CAACATTCTGCTGGTTACTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGATTTC 4593912 Query 148969 CAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCGCGCACT-TGC 149024 |||||||||| || | ||| | || ||||| || | | || || ||| | | Sbjct 4593911 CAGTTTCCACTTGTGCTTCAATAATGGCGAACC-AT--AAGGATTGAGCCTTAACTGTTC 4593855 Query 149025 TGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAG 149084 | | | | || ||||| ||||| ||| ||| | | || || | ||||| | Sbjct 4593854 GGTTGGCA-CGGCCCTCTTGCTCATATTTCACATATAACTTTTCAAATTCATCGCCCCAT 4593796 Query 149085 CAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTAC 149144 ||||| || || ||||| |||||||||||||| || ||||| | || | || | Sbjct 4593795 ACATCGTGAAGGCCAGGGCATTTGTGCGGGCACATAAGGGACCAATCTCCATTGGCCTCT 4593736 Query 149145 ACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTa 149182 || || ||||| || ||||| || | ||| | ||||| Sbjct 4593735 ACACGTTTCATGAAAAGATCAGGTATCCACAAGGCGTA 4593698 Score = 127 bits (140), Expect = 2e-24 Identities = 155/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| || ||| | | | ||||| || Sbjct 1837976 AAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCA-TCCTCCAG 1838034 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || |||||||| || || || ||||| |||||||| ||| Sbjct 1838035 CTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGAT 1838094 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||| | | ||| | ||||| | |||||||| || | ||||| ||| ||||| Sbjct 1838095 TTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCC 1838154 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGG 133662 ||| || ||||| ||||| || ||||||| Sbjct 1838155 GGTGAGGGTTTTCACGAAGATTTGCATGG 1838183 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| ||||| || || | ||| | | | || || ||||||||||| Sbjct 4507171 GTGGACTCTTTCTGAATATTATAGTCAGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 4507229 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || ||||| || ||||| ||||| ||||| || Sbjct 4507230 AGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTT 4507289 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || || | || || || || | |||| ||| ||||| || || || Sbjct 4507290 GACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGT 4507349 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 4507350 CTTAACGAAGATCTGCATG 4507368 >seq4475 Length=5362458 Score = 141 bits (156), Expect = 9e-29 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| ||| || ||| | | | || ||||| Sbjct 1656495 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCA-TCTTCGAG 1656553 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || || ||||||||||| |||||||| || |||||||| ||| Sbjct 1656554 CTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATACCCTCCTTGTCCTGGAT 1656613 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| ||||||| |||||||| || | |||| ||| ||||| Sbjct 1656614 CTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTGCC 1656673 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 1656674 AGTCAGGGTCTTCACGAAGATCTGCAT 1656700 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||||||| | ||| | | | || |||||||||||||| Sbjct 1656732 GTGGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCA-TCTTCGAGCTGCTTGCC 1656790 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || |||||||| || |||||||| |||||| ||| Sbjct 1656791 GGCGAAGATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTT 1656850 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | |||||||| || | |||| ||| || || |||| || Sbjct 1656851 CACATTCTCAATGGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTTTCCAGTCAAGGT 1656910 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 1656911 CTTCACAAAGATCTGCAT 1656928 >seq4471 Length=3711889 Score = 131 bits (144), Expect = 2e-25 Identities = 542/831 (65%), Gaps = 38/831 (5%) Strand=Plus/Minus Query 120349 CGCTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTG 120408 |||| ||||||||| || ||||| || |||||||| || || |||| ||| || | Sbjct 604338 CGCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATC 604279 Query 120409 TTCATAAACTCGAACGGGTTGCTCGCGTTAAAG-TATTTCGGCTGGCCCAA-CTGTACGA 120466 | ||| || | ||| ||||| | | ||| || | |||| | |||| || || | Sbjct 604278 TCCATGAAATTGAAAGGGTTCTTGGTGTTGTAGATCTTTC--CAACACCAAGCTCCACCA 604221 Query 120467 GCAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCG-TTCATGCCCAGC 120525 ||| ||||| || |||||||| ||||||| | |||| | ||| |||||||| | | Sbjct 604220 GCAAACGGTCTGCGACAAACTCGATGTACTGGGACATCAGGT-CGCAATTCATGCCGATC 604162 Query 120526 AACGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAAC 120585 || || || | || || | ||||||| ||||||| ||||||| || || Sbjct 604161 AAGTTTACGGGAAGGGCATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATA 604102 Query 120586 ATGGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCG---TTCGGTAGTA-CAG 120641 || ||| || | | | || | || ||| ||| || | | | | | || Sbjct 604101 ATCTCGATGAT---GCGCTCTCGCTT----TGGTCGCTGCACGAGGTGCTGGAACATCAA 604049 Query 120642 GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAG 120701 | |||||||| ||||| ||| ||||| || ||||| || |||||| || ||||| Sbjct 604048 GACGGCAAAGTCGCAGTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGTCAG 603989 Query 120702 GCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAA 120761 ||| ||||| | ||| |||| | |||| || | ||| |||||||| |||||| Sbjct 603988 GCCCGGCATCAGGCCACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAAGAA 603929 Query 120762 CACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTC 120821 | |||||| ||| ||||||||||| || ||||| | || | || | |||| Sbjct 603928 GATGCCCTCTACGGCGGCAAAGGCGATAATTCGCTCTCCAAAATTGGCTGACTTGGATGA 603869 Query 120822 GATCCACTTCATGGCCCACTCGGCCTTTTTGCGC---ACGCACGGCATCCGCTCGAACGC 120878 |||||| | ||||| || ||| |||||| || ||||||| ||||| || Sbjct 603868 GATCCAGGAAAGCGCCCAGTCCGCC---TTGCGCTTTACAGCCGGCATCGTCTCGATGGC 603812 Query 120879 GTTCAGCAGCATGTCGCGCTCGCCCTCCTC-CGCAATCAGCTGATGGATGAGCAGATTGT 120937 || | ||| || |||| | || || | | || | ||| || | | | | Sbjct 603811 ATTGAACAGGTACTCCCGCTGATGCGGATCTCGGATGTATGTG-TCGATCAGGACACTAT 603753 Query 120938 ACATTTCCGTGTGCACGCACTCGATCAGCACTTGCTGG---TTGTAAAAGTACTGCGCCT 120994 ||||||| | ||||||| || || || | |||| ||| ||| | | |||| Sbjct 603752 ACATTTCGGAGTGCACGTTTTCCAT-TGCGAT--CTGGAAACCGTAGAAGCAGCGTGCCT 603696 Query 120995 C-CAGCTCGGGCACCGCC-CGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTC 121052 | | || | ||| || ||| || ||| | ||||| |||||||| | || Sbjct 603695 CAGTGATC-TGAACCTCCTGGCTAAAT-CGCTCAACCAGGTTCTCGTTCACGATTCCATC 603638 Query 121053 GGCGGCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTT 121112 || ||||| ||||| ||||||||||| ||| ||||| |||||||||||| | || Sbjct 603637 GGAAGCGGCAAAGAAGGCCAGCACGTGTGAGATGAAGTGACGCTCGTCGTCCTTTAGGCG 603578 Query 121113 GTGCGCAAAATCGTCATAGTCCTTGGACAGGTCGACCTCCTCCACCTTCCA 121163 | || | ||||| | ||||||||||| || || |||||||| |||| Sbjct 603577 AT--GCCAGTCCGTCAGA-TCCTTGGACAGATCCACTTCCTCCACAGTCCA 603530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483390912509040