Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4563 140 8e-28 seq4542 84.2 5e-11 >seq4563 Length=5383265 Score = 140 bits (154), Expect = 8e-28 Identities = 510/789 (65%), Gaps = 17/789 (2%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||| || || ||||| || |||||| ||||||| | || || ||||| | Sbjct 4593143 TATTTCGGGTTTAAAACCCTCGAACGTTCTTATTTGTTAAAGAGAAACGGTAAGATCGCT 4593202 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||| || ||||| ||||| | || |||||||| || || || || | ||||| | Sbjct 4593203 GAACGGCCGCAACATATGTTGATGCGCGTTGCGATCGGAATCCACGGGGAAGATATCGAC 4593262 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT--ATTCATGCTACTCCTA 110481 || | | ||| ||| || | || || | | || | |||||| | || | Sbjct 4593263 GCGGCCGTAGAAACGTATAATCTTTT--GTCAGAGCGGTACTTCACTCATGCATCACCAA 4593320 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | || ||| |||| || ||| | || | |||| || || ||| || || | Sbjct 4593321 CGCTTTTTGCAGCAGCCACAAATCGGCCGCAGCTATCTTCATGTTTCCTTTTAACCATGA 4593380 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 | || || || ||||| |||| | | || | | || ||| | ||||||||| Sbjct 4593381 CAGCCGACTCCATCGAAGGCATTTTTAAGTCTGTGGAGCAATGTGCCATGATTTCTAAAT 4593440 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAA--ATAT-CG 110658 |||| || ||||| | | |||||| ||| || |||| || | |||| || Sbjct 4593441 CTGCTGGTGGCATTGGACTAAATGTTCATTGTATCCGAGCAAAGGGTACTTCGATATGCG 4593500 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 |||| || || |||| | |||||| ||||| ||| | || |||||||| || || Sbjct 4593501 GAACA---AATGGAACTTCCAATGGACTGGTTCCCATGCTGAGGGTCTTCAATAACGTTG 4593557 Query 110719 CAAAATATGTGAATCA---AGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775 | |||||| |||| ||| || ||| | || | |||||||| || || || | Sbjct 4593558 CGCGTTATGTGGATCAGGGAGGCGGCAAGCGTCCAGGAGCCTTTGCTATTTACCTGGAGC 4593617 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835 | ||||| || ||| | |||||||| | ||||| ||||| || ||||| Sbjct 4593618 CCTGGCACTCTGATGTCTTTGAATTTCTGGAACTCAAGAAAAACACTGGCAAGGAAGAGA 4593677 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895 | | || || ||| | ||||| || ||||||| | ||| | |||||||||||||| Sbjct 4593678 ATCGCGCCCGAGATCTTTTTTACGCCTTGTGGATACCTGATCTTTTCATGAAACGTGTAG 4593737 Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 | | ||||| ||||| |||||||| || || | ||||| || ||||||| Sbjct 4593738 AGGCCAATGGAGATTGGTCCCTTATGTGCCCGCACAAATGCCCTGGCCTTCACGATGTAT 4593797 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTC--GCAA 111013 || | || |||||| | | || | |||||||| |||| ||| || | | | Sbjct 4593798 GGGGCGATGAATTTGAAAAGTTATATGTGAAATATGAGCAAGAGGGC-CGTGCCAACCGA 4593856 Query 111014 ACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAAC 111073 || | || |||||| | |||||| || ||||| ||||||| |||||||||| Sbjct 4593857 AC-AGTTAAGGCTCAATCCTTATGGTTCGCCATTATTGAAGCACAAGTGGAAACTGGAAA 4593915 Query 111074 TCCTTATAT 111082 ||| ||||| Sbjct 4593916 TCCGTATAT 4593924 >seq4542 Length=855114 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || || || || |||| | |||| ||||||||||| ||||| ||||||||||| |||||| Sbjct 839043 ACGTTCCGCTTTAATGAATGTGCCTGTACGCCTTACAATGCCGATTTTGATGGCGATGAA 839102 Query 305465 ATGAATATGCATGTACCTCAATCA 305488 |||||| ||||| | || ||| || Sbjct 839103 ATGAATCTGCATTTGCCACAAACA 839126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186737590931106