Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4563 111 4e-19 seq4475 104 6e-17 seq4042 95.1 3e-14 >seq4563 Length=5383265 Score = 111 bits (122), Expect = 4e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||| ||||| ||| ||||| |||| Sbjct 1838166 AAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCGGACACCATCGAGAAT 1838107 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || || || ||| || || || | || |||||| Sbjct 1838106 GTGAAGGCTAAAATCCAAGACAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 1838047 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| |||||| | ||| || |||| |||||| ||||||| ||||| Sbjct 1838046 GCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 1837987 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 1837986 ACCCTTCAC 1837978 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| | || || ||| ||| || || ||||| Sbjct 4507352 AAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTCGGATACTATCGAAAAT 4507293 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || |||||||||||| || || || | || ||||| Sbjct 4507292 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 4507234 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||||||||| | || | | || || || | ||||||||||| Sbjct 4507233 CGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAATATTCAGAAAGAGTC 4507174 Query 206364 TACTCTTCAC 206373 ||| | ||| Sbjct 4507173 CACTTTGCAC 4507164 >seq4475 Length=5362458 Score = 104 bits (114), Expect = 6e-17 Identities = 153/216 (71%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || | || ||||| || |||||| |||| ||||| Sbjct 1656931 AAAATG---CAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACTCTGGAGGTGGAG 1656875 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||| ||||| | || || ||| ||||| ||||| || || || || || Sbjct 1656874 CCTTCGGACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCA 1656815 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || || | || ||||||||||| |||||| | |||||||| | ||| | ||||| Sbjct 1656814 GATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACTCTTTCCGAT 1656755 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||||| ||||||| ||||| ||||||||| | ||| Sbjct 1656754 TACAACATCCAGAAGGAGTCCACTCTTCACTTGGTT 1656719 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| |||||||||| || ||||| | || Sbjct 1656685 AAGACCCTGACTGGCAAGACCATCACTCTGGAAGTGGAGCCATCCGACACCATTGAGAAT 1656626 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || | || |||||| Sbjct 1656625 GTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCAGACCAGCAGCGTCTGATCTTC 1656566 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | ||||||||| | || || |||| |||||| ||||||| ||||| Sbjct 1656565 GCCGGAAAGCAGCTCGAAGATGGACGCACACTGTCCGACTACAACATCCAGAAGGAGTCC 1656506 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 1656505 ACCCTTCAC 1656497 >seq4042 Length=640736 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||||||||| || || ||| ||| Sbjct 503148 CAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGAC 503089 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || || ||||| || || || Sbjct 503088 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGATCAGCAG 503029 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| ||||||||| |||| || ||| | || ||| |||| ||||| | Sbjct 503028 CGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAATATT 502969 Query 206353 CAGAAAGAGTCTACT 206367 ||||| ||||||||| Sbjct 502968 CAGAAGGAGTCTACT 502954 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||||||||| || || ||| ||| Sbjct 503376 CAGATCTTTGTGAAGACCCTTACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGAC 503317 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || ||||| || || || Sbjct 503316 ACCATCGAGAACGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 503257 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| ||||||||| |||| || ||| | || ||| |||| ||||| || Sbjct 503256 CGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAATATC 503197 Query 206353 CAGAAAGAGTCTACT 206367 ||||| ||||||||| Sbjct 503196 CAGAAGGAGTCTACT 503182 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||||||||| || || ||| ||| Sbjct 503604 CAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGAC 503545 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || ||||| || || || Sbjct 503544 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAG 503485 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| ||||||||| |||| || ||| | || ||| |||| ||||| || Sbjct 503484 CGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAATATC 503425 Query 206353 CAGAAAGAGTCTACT 206367 ||||| || |||||| Sbjct 503424 CAGAAGGAATCTACT 503410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181745907277266