Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4563 215 5e-51 seq4720 107 2e-18 seq4475 102 8e-17 >seq4563 Length=5383265 Score = 215 bits (238), Expect = 5e-51 Identities = 944/1466 (64%), Gaps = 46/1466 (3%) Strand=Plus/Minus Query 146571 CGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTG 146630 ||| || || ||||| |||| ||||||||| || |||||||| ||| | ||| |||| Sbjct 4594945 CGCAGCTGGCTTTGTCCGCAGATAATACATTCCGGTTTTGAGCCCAGCTTTCCAGGAGTA 4594886 Query 146631 ATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTG 146690 | ||| || || |||| | | || | ||||| || || | |||||| || || Sbjct 4594885 AAAGTGTATGGACGTCAGTTTTCCATAGTTTGGCTCTGCTACATGTATATTAAAGGACTG 4594826 Query 146691 GCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTCAT 146750 || |||||||| || || || || || ||||| | ||| || || || Sbjct 4594825 ACTCTGATCTATAAACGCACCACGATCAGCGGCCATTTTAATTGTGGACTTCACAGAGAT 4594766 Query 146751 TTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAAT 146810 ||||||| |||||||||| || | ||| | | ||||||| ||||| |||||||| Sbjct 4594765 TTCCCAAACGGTTTTGTAAAGGTCACGAACCTTCTGTGGAATAGTCTCAATATTTTGAAT 4594706 Query 146811 AGAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGGCGTGTAA-AGGTTTAGTTTA 146868 || ||| || | || || || ||| | || || ||| | | || || | | Sbjct 4594705 TGAACCCCTGCTGGAAATGATT-TGGTTCTTCATGTCAT-CGTCCCACAAGTCCAGCTCA 4594648 Query 146869 ATGAGGTCA-TCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCT 146927 | | ||| |||| |||| || || ||||| || || ||||| | ||| || | ||| Sbjct 4594647 GTCAAGTCCCTCAAC-AAATGATGGTTAACCACCTGGAATTCGCCAGACAGAACTCTTCT 4594589 Query 146928 GAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGT 146987 | ||| | ||| |||| | ||||| ||||| || || ||||| | || || || || Sbjct 4594588 GGTATAAATATTAGTAGTATACGGCTCGAAAGATTCGTTGTTGCCCATAATCTGAGCAGT 4594529 Query 146988 GGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTT 147047 | ||| || ||||| || |||| || || || || | ||||| | || Sbjct 4594528 AGATGCTGTTGGCATAGGAGCAACCAGCAGGGAGTTCCGGACACCGTGCTTCTTTATCGA 4594469 Query 147048 GTCCTTCAAAGTTTGCCAGTCCCACA---TCGACGAGGGCGTCACGTTCCACATGTCGTA 147104 ||||| | ||||||||||||| | ||| || | | | || |||||||||||| Sbjct 4594468 CTCCTTTAGCTTTTGCCAGTCCCAGAGGTTCGTCG-GAACTTT--GTCCCACATGTCGTA 4594412 Query 147105 CTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTG 147164 ||| | | |||| || | || || || | | || ||| || ||| ||| Sbjct 4594411 CTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCATAAGTTTCGTATGGGCCTTCGATCTG 4594352 Query 147165 CGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTT 147224 || |||||||| || || || | || |||||||| || |||||| || || | || Sbjct 4594351 AGCTAATTCACAACTGGCTTCCAAAGCCCCATAGTAAATCGTTTCGAATATCTGCTGATT 4594292 Query 147225 TAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAA 147284 | || | ||||||| || || || || || | |||| || | || ||||| || || Sbjct 4594291 CAAGAGGCTCGCTTCATCACTTTCATATGGGAATCGCATGAGAATTAATGCATCAGCAAA 4594232 Query 147285 ACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTG--CTGCGCTTCGCGCTCGCT 147342 ||||| | |||| ||| | || |||||| | ||| || | ||| | || || Sbjct 4594231 GCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAAATTGGACTTC-CTTGCCTCTGGC- 4594174 Query 147343 ATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATT 147402 | ||||| |||| ||| || ||||||||||| || | || || || | | Sbjct 4594173 AGCGGATAAAAGTTGATATCGATTATCTTGTTGAGATTTCTGGTAACCGTCTTGGTGACT 4594114 Query 147403 GTTTTGAGTTTCTCGAAATCATAAGTCCCGTC---TTCGACACGTACGCATTGGTTCACG 147459 || ||||| | |||||| || ||| || | ||| | ||| ||| | Sbjct 4594113 TCCTTTAGTTTTTTGAAATCGTATGTCTTTTCCGGTGTGAC----AAACAT--GTTAAGA 4594060 Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCG 147519 || || || |||| || || || || |||| || | | | ||||| || ||||| Sbjct 4594059 GCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGAGTACTCGACAATTTCT 4594000 Query 147520 GCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCAC 147579 | ||||| ||| |||||||| ||| || | ||| ||||| || || |||| ||||| Sbjct 4593999 GTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTTACTCTTCCTGTTGCAG 4593940 Query 147580 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAAC 147636 || || ||||||||||| ||||| || || || ||||| | ||||| || ||| Sbjct 4593939 GCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGCTTCAATAATGGCGAAC 4593880 Query 147637 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAG--CGGCCCTCGTTTTCGTACCGCT 147694 | || | | || || | | | | | | | | | |||||||| | || || | Sbjct 4593879 C-AT--AAGGATTGAGC-CTTAACTG-TTCGGTTGGCACGGCCCTCTTGCTCATATTTCA 4593825 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGAC 147754 | || ||| ||||| || ||||| | |||| |||||| || || | ||||| | Sbjct 4593824 CATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGGGCATTTGTGCGGGC 4593765 Query 147755 ACATCAGCGACCACATGT-CGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCAC 147813 |||| || ||||| || | | | || | || ||| ||| || ||||| || | |||| Sbjct 4593764 ACATAAGGGACCA-ATCTCCATTGGCCTCTACACGTTTCATGAAAAGATCAGGTATCCAC 4593706 Query 147814 AGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGC---GCCCATGTTGCGTTTCAAA 147870 | ||||| | |||||| || || || || ||| | ||| |||| || | Sbjct 4593705 AAGGCGTAAAAAAGATCTCGGGC---GCGATTCTCTTCCTTGCCAGTGTTTTTCTTGAGT 4593649 Query 147871 TTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 | || | | ||| || | ||||||||| || | ||| | || | || ||| | Sbjct 4593648 TCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGCAAAGGCTCCTGGA 4593589 Query 147931 CGCTTTCCG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 ||||| ||| ||||| || |||| ||| | | ||| || || || | || |||||| Sbjct 4593588 CGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTATTGAAGACCCTCAGCATGGGA 4593529 Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGT 148013 |||| || | | ||| || || || Sbjct 4593528 ACCAGTCCATTGGAAGTTCCATTTGT 4593503 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | |||||||| ||||| || ||||| | ||| Sbjct 4507146 ACGCAGACGCAGCACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAGAGGGT 4507205 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | |||| |||||||| ||||||||||| || || Sbjct 4507206 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 4507265 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||| || ||| | | ||| | |||||| | || || || || | Sbjct 4507266 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAG 4507325 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || || || || || | ||| ||||||||| Sbjct 4507326 AGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATG 4507368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| || || |||||||||||| || || Sbjct 1837960 ACGCAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 1838019 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || |||| |||| |||||||| |||||||| || ||||| Sbjct 1838020 GCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCC 1838079 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||||| |||| | || | || || | |||||||| || | Sbjct 1838080 CTCCTTGTCTTGGATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAA 1838139 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || || || ||||| | ||| || |||||| Sbjct 1838140 GGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATG 1838182 >seq4720 Length=6167446 Score = 107 bits (118), Expect = 2e-18 Identities = 227/338 (67%), Gaps = 3/338 (1%) Strand=Plus/Plus Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600 |||| || || | ||||||||| | || | || | ||||||||| | |||||||||| Sbjct 2981566 CAATGCCAATAACGCCGCAGCCAATGCGAGCACCAGCGTTGCCCGTAGACTTGCTCAGCT 2981625 Query 51601 GATGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGA 51660 || | ||||||||| ||| | ||||| ||||||| | |||| |||| || Sbjct 2981626 CGTGTCCACCCTTGCCGAGATCATCGGCATCGGCGTGGACCACCACAGTGCGTCCAATGA 2981685 Query 51661 CGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGT 51720 ||| | ||||||| || || ||| | || | || || | ||| || || Sbjct 2981686 TGCTGTCAGCGCCGAAGAGTGTGATCTTGGAATCTGTAATGCTGACCTTTGTGGGGCAGT 2981745 Query 51721 TGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAG 51780 | | ||||| | ||||||| ||||| | |||||| | | || || | Sbjct 2981746 CTC---CGGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGGCGGTTTTCGTCGACGGGGG 2981802 Query 51781 CGCCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGG 51840 | ||||| || ||||| || || || || |||| |||| |||| || ||| || Sbjct 2981803 CACCGTGCTCCTTGCCGTACGGATTAAAATGCGGTCCCGACGACATGCACCCATTGGTGT 2981862 Query 51841 TGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878 |||| |||||||| ||||| |||||||||||||||||| Sbjct 2981863 TGTCCCCGAATTCATGCACATGGAATCCGTGCAGGCCC 2981900 >seq4475 Length=5362458 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || |||||||||||| || || || ||||||| Sbjct 1656492 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCG 1656551 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| |||| |||||||| || |||||||| || || || || || Sbjct 1656552 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATACCCTCCTTGTCCTGG 1656611 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | || |||| ||||||||||| | || | || || Sbjct 1656612 ATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTTG 1656671 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || | ||| |||||||| Sbjct 1656672 CCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | |||||| || | | ||||| || || |||||||| ||| | || Sbjct 1656707 ACGCAAACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGAGT 1656766 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||||||||| || |||| |||| |||||||| ||||||||||| || || Sbjct 1656767 GCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATACC 1656826 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || || | |||||||| || | Sbjct 1656827 CTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCACCTCCAG 1656886 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||| || || | || |||||||| Sbjct 1656887 AGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 1656928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476581733512560