Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4681 132 4e-26 seq4042 125 6e-24 seq4475 111 1e-19 seq4563 104 2e-17 >seq4681 Length=7884553 Score = 132 bits (146), Expect = 4e-26 Identities = 205/290 (71%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 44131 TGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTA 44190 |||||||| | || ||| |||||| |||| || || || |||||| | |||| | Sbjct 5741617 TGTGGAACTCGGCGCAACTGCAACTGGTGCGCGAGGGCAAGATGCACGGCTTTCTGCGCA 5741676 Query 44191 TGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCGTTCATG 44250 |||| ||| || || || | |||||| | | | | || ||||| | ||| Sbjct 5741677 TGTACTGGGCAAAAAAAATTCTCGAGTGGACTGCCACTCCTGAAGAGGCGCTGGAGTATG 5741736 Query 44251 CCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGGAT 44310 | || | || ||||| |||||||| | || || || ||||| ||||| || || || | Sbjct 5741737 CGATATTACTAAACGATAAGTACAGCCTCGATGGACGTGACCCTAACGGTTATGTTGGGT 5741796 Query 44311 GTATGTGGTCCATTTGCGGTGTCCACGACAGGGCGTGGCGAGAGCTACCCATCTACGGCA 44370 |||||||||| ||| ||||||| ||||||| || ||| |||| || || | ||| | Sbjct 5741797 GTATGTGGTCTATTGGCGGTGTGCACGACATGGGTTGGAAGGAGCGCCCTATTTTCGGAA 5741856 Query 44371 AAGTGCGCTACATGAACTA-CAACGGTTGCGTCAGAAAGTTTGATGTAAA 44419 | || || ||||||||||| || ||| || | |||||||||||||||| Sbjct 5741857 AGGTCCGGTACATGAACTATCAGGGGTGTCGGC-GAAAGTTTGATGTAAA 5741905 >seq4042 Length=640736 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| |||| | || |||||||| || ||| |||||| ||||| ||||| |||| | Sbjct 502925 CCACCGCGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGAC 502984 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| ||||||||||| || || || ||||| |||||||| || | || Sbjct 502985 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503044 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||| | | | | |||||| | || ||| Sbjct 503045 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACC 503104 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | || |||||||| |||||||| Sbjct 503105 TCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 503151 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| || ||| |||||| || || ||||| |||| |||||| || |||| || Sbjct 503170 CACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGTCCGTCCTC 503229 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || ||||| |||||||| || | || | | |||||||||| Sbjct 503230 CAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 503289 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | |||||| | || ||||||| ||||| || || Sbjct 503290 GATCTTGGCCTTAACGTTCTCGATGGTGTCGGAAGGCTCAACCTCCAAAGTGATGGTCTT 503349 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || |||||||| |||||||| Sbjct 503350 GCCGGTAAGGGTCTTCACAAAGATCTGCAT 503379 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| || ||| |||||| || || ||||| |||| |||||| || |||| || Sbjct 503626 CACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGTCCGTCCTC 503685 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || ||||| |||||||| || | || | | |||||||||| Sbjct 503686 CAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 503745 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | |||||| | || || |||| ||||| || || Sbjct 503746 GATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACTTCCAAGGTGATGGTCTT 503805 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| ||||| || || ||||| Sbjct 503806 GCCAGTCAAAGTCTTCACGAAAATTTGCAT 503835 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| || ||| ||||| || || ||||| |||| | Sbjct 503381 CCACCACGCAGACGGAGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAGTCGGAC 503440 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| ||||||||||| || || || ||||| |||||||| || | || Sbjct 503441 AAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGG 503500 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | |||||| | || ||| Sbjct 503501 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACC 503560 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | || |||||||| |||||||| Sbjct 503561 TCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 503607 >seq4475 Length=5362458 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| | || || | || || |||||||| || || || Sbjct 1656737 CTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAA 1656796 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| || | ||| | | ||||||||| |||||| ||||| | | Sbjct 1656797 GATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTCACATT 1656856 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | |||||||||| ||||| || || || ||||| || ||||| Sbjct 1656857 CTCAATGGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTTTCCAGTCAAGGTCTTCAC 1656916 Query 35725 AAATATCTGCATTCTG 35740 ||| ||||||||| || Sbjct 1656917 AAAGATCTGCATTTTG 1656932 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || |||||| || |||||||| |||| || || || | || || Sbjct 1656491 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTC 1656550 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| || || || |||| ||||||||||| | ||| | | |||||||||| Sbjct 1656551 GAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATACCCTCCTTGTCCTG 1656610 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | | |||||| | ||||| |||| ||||| || || Sbjct 1656611 GATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTT 1656670 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || ||||| || |||||||| Sbjct 1656671 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 >seq4563 Length=5383265 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || |||||| || |||||||| |||| | Sbjct 1837955 CCACCACGCAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1838014 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || |||| |||||||| || | ||| Sbjct 1838015 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1838074 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| ||| || ||||| | | | | ||||| | |||||| Sbjct 1838075 ATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 1838134 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | |||||||| || || ||||| Sbjct 1838135 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 1838181 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||| || || || ||| || ||||| || || || | Sbjct 4507141 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAG 4507200 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| || || || |||| |||||||| || | |||| Sbjct 4507201 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 4507260 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || |||||| ||||| || | | || | | || || | ||| ||| Sbjct 4507261 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACC 4507320 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTG 35742 || | ||||| || || ||||| | || || || || |||||||| |||| Sbjct 4507321 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATGTTGTG 4507373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450765729685680