Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4563 500 1e-136 seq4471 185 1e-41 >seq4563 Length=5383265 Score = 500 bits (554), Expect = 1e-136 Identities = 1242/1874 (66%), Gaps = 16/1874 (1%) Strand=Plus/Minus Query 68364 CTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACC 68423 ||| |||| || |||||||||| | || || ||||| || ||||| ||||| || Sbjct 4594972 CTTGTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATTCC 4594913 Query 68424 GGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGG 68483 |||||| || || |||| ||| || || || || ||||| ||| |||| Sbjct 4594912 GGTTTTGAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGTTTGG 4594853 Query 68484 ATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGC 68543 || |||| ||| ||||| | || ||||| ||||| || || || || | ||| || || Sbjct 4594852 CTCTGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAGCGGC 4594793 Query 68544 CATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATC 68603 |||||| || | ||| || |||||||||| || || ||| | | | Sbjct 4594792 CATTTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAACCTT 4594733 Query 68604 ATCTGGAA--GGCTCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGAT 68660 | ||||| | ||| |||||||||| || || | ||| || ||| ||||| || Sbjct 4594732 CTGTGGAATAGTCTCAATATTTTGAATTGAACCCCTGCTGGAAATGATTTGGTTCTTCAT 4594673 Query 68661 CTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTG 68720 ||||| | |||||| | ||| || || | || | | ||| | ||||| | || Sbjct 4594672 GTCATCGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAATGATGGTTAACCACCTG 4594613 Query 68721 AAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 68780 ||||| ||||| | ||||| | || ||||||||| | ||||| || || | |||||| Sbjct 4594612 GAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAGATTC 4594553 Query 68781 ATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATT 68840 || || |||| ||| |||||||| ||||| ||||||||||| || |||| | || Sbjct 4594552 GTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGGAGTT 4594493 Query 68841 TCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGG 68900 | | ||| || | | || || ||||| | || ||| ||||| || | | || Sbjct 4594492 CCGGACACCGTGCTTCTTTATCGACTCCTTTAGCTTTTGCCAGTCCCAGAGGTTCGTCGG 4594433 Query 68901 TACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGT 68960 || | ||| | ||||| || | |||||| || ||| | ||| | ||| || Sbjct 4594432 AACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCATAAGT 4594373 Query 68961 TTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAAT 69020 ||| || || ||||| | ||||| ||||||||| || || || || || || ||||| Sbjct 4594372 TTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATAGTAAAT 4594313 Query 69021 TGTTTCGAAAATCTTCTTATTGA-GATCTTGTGCTTCTAGACTATCGAATGGATAATGTA 69079 |||||||| |||| || ||| | || | ||||| ||| || |||| | | | Sbjct 4594312 CGTTTCGAATATCTGCTGATTCAAGAGGCTC-GCTTCATCACTTTCATATGGGAATCGCA 4594254 Query 69080 AAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTAT 69139 ||||| |||||||| || || |||||||| || || || | || | ||| ||| || Sbjct 4594253 TGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAAAT 4594194 Query 69140 TTGAACTTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTT 69198 | || ||| | || ||||| | |||||| | || ||||| || || || || |||||| Sbjct 4594193 TGGA-CTTCCTTGCCTCTGGCAGCGGATAAAAGTTGATATCGATTATCTTGTTGAGATTT 4594135 Query 69199 CGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATC----TAT 69254 | | || || || ||||||||||| ||||| || ||| | | | Sbjct 4594134 CTGGTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTAT-GTCTTTTCCGGTGT 4594076 Query 69255 AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC 69314 |||||||| || || || | ||||| | ||||||||||| | ||||| | | Sbjct 4594075 GACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGA 4594016 Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 || | | || ||||| || | ||||| ||||| || || || | ||| ||||| || Sbjct 4594015 GTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTT 4593956 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 |||||| |||| ||||| |||||| | || ||| ||||| | |||||||| | || | Sbjct 4593955 ACTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGC 4593896 Query 69435 TTCGATAATAGATTTCCAAACGACCCTAGCATTTATTA--CGGTCTTGTAACGCTTCTCT 69492 ||| ||||| | ||| | | ||| || | | |||| || ||| |||| Sbjct 4593895 TTCAATAATGGCGAACCATAAGGATTGAGCCTTAACTGTTCGGT--TGGCACGGCCCTCT 4593838 Query 69493 TTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGA 69552 | ||||||| ||||| | ||| |||||||| ||||| ||||| | | ||||| Sbjct 4593837 TGCTCATATTTCACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGGG 4593778 Query 69553 CATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGA 69612 |||| | || ||||| | ||||| | ||| ||| || |||||||| || ||| Sbjct 4593777 CATTTGTGCGGGCACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAGA 4593718 Query 69613 TCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttt 69672 || || ||||| | || ||| ||||||| || | ||| ||||| || || || ||| Sbjct 4593717 TCAGGTATCCACAAGGCGTAAAAAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGTGTTT 4593658 Query 69673 tttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATG 69732 || || || || ||||| || | | |||||| ||||| || || || || || || | | Sbjct 4593657 TTCTTGAGTTCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGCAAAG 4593598 Query 69733 ACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTC 69792 |||| || || || ||||||||||| | || | ||| |||||| |||| ||| Sbjct 4593597 GCTCCTGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTATTGAAGACCCTC 4593538 Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG 69852 ||||| |||| | ||||| || | ||||||||||| | || || | || |||| Sbjct 4593537 AGCATGGGAACCAGTCCATTGGAAGTTCCATTTGTTCCGCATATCGAAGTACCCTTTGCT 4593478 Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 || ||| | || | ||| || || || || || |||||| || | ||||| | Sbjct 4593477 CGGATACAATGAACATTTAGTCCAATGCCACCAGCAGATTTAGAAATCATGGCACATTGC 4593418 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 | || | | | | || || || ||| || || ||||| | | ||| ||||| | Sbjct 4593417 TCCACAGACTTAAAAATGCCTTCGATGGAGTCGGCTGTCATGGTTAAAAGGAAACATGAA 4593358 Query 69973 GACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCAT 70032 || | || | | | || | || ||| | || || ||||| |||||||| | Sbjct 4593357 GATAGCTGCGGCCGATTTGTGGCTGCTGCAAAAAGCGTTGGTGATGCATGAGTGAAGTAC 4593298 Query 70033 TTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCT 70092 || || | ||||| || ||||| | || | || ||||| | || ||||| Sbjct 4593297 CGCTCTGACAAAAGATTATACGTTTCTACGGCCGCGTCGATATCTTCCCCGTGGATTCCG 4593238 Query 70093 ATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAAC 70152 ||||| || |||||||||||||| || || ||||| | | ||| ||| | || ||| Sbjct 4593237 ATCGCAACGCGCATCAACATATGTTGCGGCCGTTCAGCGATCTTACCGTTTCTCTTTAAC 4593178 Query 70153 AGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAA 70212 | || || ||| || ||||||||||| ||||| || || |||||| | ||||| Sbjct 4593177 AAATAAGAACGTTCGAGGGTTTTAAACCCGAAATAATTATACCCAAAGTCGCGATCGTAG 4593118 Query 70213 ATAATAACAGAATT 70226 || ||| ||||| Sbjct 4593117 ATTATAGATGAATT 4593104 >seq4471 Length=3711889 Score = 185 bits (204), Expect = 1e-41 Identities = 549/839 (65%), Gaps = 11/839 (1%) Strand=Plus/Minus Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376 |||||||| ||||| || || || |||||||| || || || || || |||| Sbjct 604347 ACTCCCATACGCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGC 604288 Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436 || || | |||||||||| || || || | | || || | ||| || || | Sbjct 604287 GAGATCATCTCCATGAAATTGAAAGGGTTCTTGGTGTTGTAGATCTTTCCAACACCAAGC 604228 Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATT 39496 || | ||| | ||||| ||||| || ||||| ||||| || |||||||| Sbjct 604227 TCCACCAGCAAACGGTCTGCGACAAACTCGATGTACTGGGACATCAGGTCGCAATTCATG 604168 Query 39497 CCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCT 39556 || || | || || || || || || || || ||||| | || ||| | || || || Sbjct 604167 CCGATCAAGTTTACGGGAAGGGCATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGTCG 604108 Query 39557 --GTTATTATCGATGTTACTACCTCATCACTC-GGTGGATGCAATAAATGTTTAAACATT 39613 | || | |||||| | | ||| || || ||| | |||| | || | ||||| Sbjct 604107 CGGATAATCTCGATGATGCG--CTC-TCGCTTTGGTCGCTGCACGAGGTGCTGGAACATC 604051 Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||| ||| ||||| || || | ||| || || | || | |||||| || ||||| Sbjct 604050 AAGACGGCAAAGTCGCAGTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGTC 603991 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 || || ||||| || ||||| || || ||||| || || | || || || |||| Sbjct 603990 AGGCCCGGCATCAGGCCACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAAG 603931 Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---A 39790 |||||||| ||||| || ||||| || | || || |||||| || ||| | | | | Sbjct 603930 AAGATGCCCTCTACGGCGGCAAAGGCGATAATTCGCTCTCCAAAA-TTGGCTGACTTGGA 603872 Query 39791 TGT-ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 || ||||| | ||||| || || || ||||||| ||||| || || || || Sbjct 603871 TGAGATCCAGGAAAGCGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATCGTCTCGATGGC 603812 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 ||| || || || | | || |||| | ||||| || || | | |||||| Sbjct 603811 ATTGAACAGGTACTCCCGCTGATGCGGATCTCGGATGTATGTGTCGATCAGGACACTATA 603752 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 |||||| || || | |||||| || || ||||| || ||||| || || | ||| ||||| Sbjct 603751 CATTTCGGAGTGCACGTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGCCTCAGT 603692 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 || || ||||| | ||||| || ||| || || ||||| |||||||| ||| Sbjct 603691 GATCTGAACCTCCTGGCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATCGGAAGC 603632 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089 |||||| || |||| || ||| || || | || ||| | | || ||| Sbjct 603631 GGCAAAGAAGGCCAGCACGTGTGAGATGAAGTGACGCTCGTCGTCCTTTAGGCGATGCCA 603572 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||| | | ||| || || | ||| ||||| || | ||||| || || ||||| |||| Sbjct 603571 GTCCGTCAGATCCTTGGACAGATCCACTTCCTCCACAGTCCAGAAGGAAGCCTCAGCCT 603513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686866331863440