Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4119 147 2e-30 seq4563 86.0 5e-12 >seq4119 Length=1683643 Score = 147 bits (162), Expect = 2e-30 Identities = 433/664 (65%), Gaps = 10/664 (2%) Strand=Plus/Plus Query 19283 GAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATG 19342 |||| || | || ||||| ||| | |||| | | |||||||||| || || |||| Sbjct 1621793 GAGCCTTCGCCTCTCGTGTCTTTCCACCAGAACTTGTCGAACAATTGGGCTGCAAGCATG 1621852 Query 19343 TTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAAC 19402 | || | |||| ||||| ||||| ||| ||| ||||| |||| || | || Sbjct 1621853 TCAAGGGCATCCTGCTATATGGTCCACCTGGTACTGGTAAAACCCTAATGGCTCGTCAAA 1621912 Query 19403 TTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATA 19462 || ||| | || | | || || ||||| ||||| || |||| | | | Sbjct 1621913 TTGGTACCATGCTGAATGCCCGTGAACCAAAGATTGTCAATGGACCGCAAATTCTTGACA 1621972 Query 19463 AATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAAC 19522 ||||||| || ||||||||| ||||| || || | || || || ||||| || ||| Sbjct 1621973 AATATGTTGGCGAATCGGAAGCCAATGTCCGGCGACTATTCGCCGAGGCTGAGGAGGAAG 1622032 Query 19523 AAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAA 19582 | |||||||| || | ||| ||| ||||| || || || | ||||| | || || | Sbjct 1622033 AGAAACGTTTGGGACCCAACAGTGGGTTGCATATCATCATCTTCGATGAGATCGATGCCA 1622092 Query 19583 TCTGTAAGCAAAGAGGTTCTGGTGT---AAAT---GGAGTACATGACACTGTTGTCAATC 19636 | || ||||| | || |||| | |||| || ||||| ||||| || ||||||| Sbjct 1622093 TTTGCAAGCAGCGTGGCTCTGTGGCCGGAAATAGTGGTGTACACGACACCGTCGTCAATC 1622152 Query 19637 AACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGA 19696 |||| || | ||| | || |||||| | || || || ||||| | || |||||||||| Sbjct 1622153 AACTGCTAACCAAAATCGATGGTGTTGATCAGCTAAACAATATCCTTGTCATTGGCATGA 1622212 Query 19697 CTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGA 19756 | ||| | || | || || || || | ||||||||||| | || | | | Sbjct 1622213 CCAATCGCAGAGACATGATCGATGAGGCACTACTGCGACCCGGTCGTCTCGAGGTCCAAA 1622272 Query 19757 TCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAA 19816 | ||||| | | ||| | ||| || || || | ||| | || || ||||| ||| Sbjct 1622273 TGGAAATCAGTCTGCCCAACGAACAGGGCCGCGTTCAGATTCTCAATATCCATAC--CAA 1622330 Query 19817 CC--ATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGC 19874 | ||||| | ||| | || |||||||| ||| | || ||||| ||| Sbjct 1622331 ACGGATGCGTGATTTCAACAAGATCAACGACGATGTGGATAACAAGGAGATTGCTGCGCT 1622390 Query 19875 TACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGC 19934 || || || | || || || || || || ||||| || | || || || |||| ||| Sbjct 1622391 AACGAAGAATTTCAGTGGAGCCGAGCTGGAAGGATTGGTCCGTGCTGCTCAGTCAAGTGC 1622450 Query 19935 AATG 19938 ||| Sbjct 1622451 CATG 1622454 >seq4563 Length=5383265 Score = 86.0 bits (94), Expect = 5e-12 Identities = 188/282 (67%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 41133 GACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATT 41192 |||||||| | || || || || ||||| || || || || || || || ||||| Sbjct 3137308 GACATGGGCTTGGGCGTGCCCTTCAACATCGCCTCCTACGCCCTCCTTACCTACATGATC 3137367 Query 41193 GCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATT 41252 || || || || | | || || || || ||||| ||||| | || || ||| | Sbjct 3137368 GCCCATGTGACGGGTCTGAAGCCGGGCGACTTTGTGCACACCATGGGCGACACACACGTC 3137427 Query 41253 TACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCA 41312 || | || || ||||||| | | || || ||| ||| | ||| |||| ||||| Sbjct 3137428 TATCTGAACCATGTAGAGCCCCTTAAGGAGCAGCTGGAACGTACACCACGACCCTTTCCC 3137487 Query 41313 ACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTC 41372 | | | | ||||| ||| || | |||| || |||||| || |||| || || | Sbjct 3137488 AAGATGGTGATTAAGCGCCAGGTAAAGGACATCGAAGATTTTCGCTTCGAGGACTTCGAG 3137547 Query 41373 GTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATG 41414 || |||||||||||| || || || ||| | ||||||||| Sbjct 3137548 GTAGTCGATTACAATCCATATCCCAAGATCAAGATGGACATG 3137589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397432041600730