Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4563 167 2e-36 seq4042 122 7e-23 seq4475 118 9e-22 >seq4563 Length=5383265 Score = 167 bits (184), Expect = 2e-36 Identities = 997/1578 (63%), Gaps = 49/1578 (3%) Strand=Plus/Minus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || |||||||| ||||||||||| | || ||||| || |||| ||||||||| || Sbjct 4594971 TTGTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATTCCG 4594912 Query 130466 GTTTTGAGTCCAATTTTGTGTCCA----TAATTGTGGATGCTGCACATTGTTTGGTAATT 130521 |||||||| ||| ||| ||| ||| ||| ||| || | || || || Sbjct 4594911 GTTTTGAGCCCAGCTTT----CCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGTT 4594856 Query 130522 GGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGC 130581 || | || || ||| || | || || ||||| ||||| || || | || || Sbjct 4594855 TGGCTCTGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAGC 4594796 Query 130582 AGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAAT 130641 ||||| | | ||| || || |||||| |||| ||||| || || | || Sbjct 4594795 GGCCATTTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAAC 4594736 Query 130642 GTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCG 130701 | | || || | |||| ||||| ||| || ||| || |||| ||| Sbjct 4594735 CTTCTGTGGAATAGTCTCAATATTTTGAATTGAACCCCTGCTGGAAATGATTTGGTTCTT 4594676 Query 130702 CATACTTTTATCGT---ACAATCCAAGCT--GTACAAGATCTTTTACCAAATGATTATTA 130756 ||| | ||||| |||| | |||| || |||| || | | |||||||| ||| Sbjct 4594675 CATG---TCATCGTCCCACAAGTCCAGCTCAGT-CAAG-TCCCTCAACAAATGATGGTTA 4594621 Query 130757 ATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCA 130816 | | || || || |||| ||| || | ||| ||||| || | || |||| || Sbjct 4594620 ACCACCTGGAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCG 4594561 Query 130817 AAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAAT 130876 || |||||||||||||| | || || || |||| ||| || ||||| || || | Sbjct 4594560 AAAGATTCGTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGC 4594501 Query 130877 AGAGAATTACGAAGACCGTGCGTCGTGATTTTTCG----CTTCAATTCATCCCAATCCCA 130932 || || || || | ||||||| || ||| ||| ||| | | | ||| |||| Sbjct 4594500 AGGGAGTTCCGGACACCGTGCTTC----TTTATCGACTCCTTTAGCTTTTGCCAGTCCC- 4594446 Query 130933 TAGAGAGGTAGGTTTG-ACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGG 130991 |||||| || | || |||| |||||| || | || | || ||||| || | | Sbjct 4594445 ---AGAGGTTCGTCGGAACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCG 4594389 Query 130992 GACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCA 131051 | || || | | |||||| ||||||| |||| | || || ||||||| Sbjct 4594388 GGCTTCCCTCATAAGTTTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCA 4594329 Query 131052 AAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCT 131111 |||| || || ||||| |||||| || || | ||| || | |||||| | || | Sbjct 4594328 AAGCCCCATAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGGCTCGCTTCATCACTTT 4594269 Query 131112 CGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCG 131171 | || || ||| ||| | ||| || || || || | ||||| | || | |||||| | Sbjct 4594268 CATATGGGAATCGCATGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGG 4594209 Query 131172 GTCTATGTTTTAAATTACATTTACGCGAACATTCGGTG-GGATAAAGGTTAATGTCAATT 131230 | | ||| | ||||| | || | | | | | | ||||||| ||| || || ||| Sbjct 4594208 GGCGATGCCTCAAATTGGACTTCCTTG-CCTCTGGCAGCGGATAAAAGTTGATATCGATT 4594150 Query 131231 ATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAAC 131290 || ||||| | ||| | || | | ||||| || | ||| | |||||| | Sbjct 4594149 ATCTTGTTGAGATTTCTGGTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTAT 4594090 Query 131291 GTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCC 131350 || |||| | | ||||| || | | || || |||| ||||||||||| Sbjct 4594089 GT---CTTTTCCGGTGTGACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCA 4594033 Query 131351 GTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTG 131410 | || || | | |||| |||||||| | |||||| ||||||| || |||||| Sbjct 4594032 ATCTCATCCGGGGAGGAGTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTG 4593973 Query 131411 CCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGT 131469 || | ||| || || || || || | | || | |||||| | | ||| || || | Sbjct 4593972 CCAACATTCTGCTGGTTACTCTT-CCTGTTGCAGGCATCCTTGAAGAGCATATACGGATT 4593914 Query 131470 GCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAATTGA 131527 || ||||| ||||| | |||||||||| |||| | | | |||| || || Sbjct 4593913 TCCAGTTTCCACTTGTGCTTCAATAATG--GCGAACCATAAGGATTGAGC-CTTAACTGT 4593857 Query 131528 T-ATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAA 131586 | ||| |||| || || || || | || ||| ||||||| | | ||| | Sbjct 4593856 TCGGTTGGCACGGCCCTCTTGCTCATATTTCACATATAACTTTTCAAATTCATCGCCCCA 4593797 Query 131587 CGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTC 131646 | || | || |||| | || ||||| || ||||| | || || || Sbjct 4593796 TACATCGTGAAGGCCAGGGCATTTGTGCGGGCACATAAGGGACCAATCTCCATTGGCCTC 4593737 Query 131647 AACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTT 131706 || || ||||| || | ||| || | ||| || ||||| || ||||||| || || Sbjct 4593736 TACACGTTTCATGAAAAGATCAGGTATCCACAAGGCGTAAAAAAGATCTCGGGCGCGATT 4593677 Query 131707 CTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGG 131766 |||||| | || | |||| || | | | ||| || || | || | |||||||| Sbjct 4593676 CTCTTCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAATTCAAAGACATCAGAGTGCCAGGG 4593617 Query 131767 TTCCAAATACACTGCCATTGCGCCTTTGCGCTTACCGCCT---TGATTAACATGACGAAC 131823 |||| || | || | || ||| ||||| |||||| |||| |||| ||| | Sbjct 4593616 CTCCAGGTAAATAGCAAAGGCTCCTGGACGCTTGCCGCCTCCCTGATCCACATAACGCGC 4593557 Query 131824 CATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCA-TTGGTGCTCT 131882 | ||| ||| | || | || |||||| ||| || |||| ||||| ||| | | | Sbjct 4593556 AACGTTATTGAAGACCCTCAGCATGGGAACCAGTCCATTGGAAGTTCCATTTGTTCCGCA 4593497 Query 131883 TAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATT 131942 || | || | || || |||| ||| ||||| || |||||||| || || | ||| Sbjct 4593496 TATCGAAG-TACCCTTTGCTCGGATACAATGAACATTTAGTCCAATGCCACCAGCAGATT 4593438 Query 131943 TAGAGATTAGTGCGCATT 131960 |||| || | || |||| Sbjct 4593437 TAGAAATCATGGCACATT 4593420 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || || || ||||||||| | Sbjct 1837955 CCACCACGCAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1838014 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||| || |||||| | || |||||||| ||||| || || Sbjct 1838015 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1838074 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGT-GGCTTCAAC 27199 | ||||| || || ||| || |||| | || | ||||| | |||| || | Sbjct 1838075 ATGCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 1838134 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | || || || | ||||| || || |||||||| ||||||||||| Sbjct 1838135 TCCAAG-GTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 1838181 >seq4042 Length=640736 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| || | |||||||| || ||||| || || || |||||||||||| Sbjct 503607 TGCCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGG 503666 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | | || |||| || ||||| || || ||| | || | |||||| ||||| || | Sbjct 503667 ACAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGG 503726 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | | || | ||||| | | |||| Sbjct 503727 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAA 503786 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| | || || | ||||| |||| ||| ||||| || ||||||||| Sbjct 503787 CTTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATA 503836 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| || | |||||||| || ||||| || || || |||||||||||| Sbjct 503151 TGCCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGG 503210 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | | || |||| || ||||| || || ||| | || | |||||| ||||| || | Sbjct 503211 ACAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGG 503270 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | | || | ||||| | | |||| Sbjct 503271 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCGGAAGGCTCAA 503330 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | ||| || | ||||| || || || ||||||||||| ||||| Sbjct 503331 CCTCCAAAGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCAT 503379 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | |||| |||||||| || ||||| || || ||||||||||||||| Sbjct 502924 GCCACCGCGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGA 502983 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | | || |||| || ||||| || || ||| | || | |||||| ||||| || || Sbjct 502984 CAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 503043 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| || | | | || | ||||| | | ||||| Sbjct 503044 GATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAAC 503103 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | ||||| || || || ||||||||||| ||||| Sbjct 503104 CTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 503151 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | |||||||| || ||||| || || || |||||||||||| Sbjct 503379 TGCCACCACGCAGACGGAGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAGTCGG 503438 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | | || |||| || ||||| || || ||| | || | |||||| ||||| || | Sbjct 503439 ACAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGG 503498 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | | || | ||||| | | |||| Sbjct 503499 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAA 503558 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | ||| || | ||||| || || || ||||||||||| ||||| Sbjct 503559 CCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 503607 >seq4475 Length=5362458 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | ||||| || | || || || || || || ||||||||| | Sbjct 1656474 CCTCCGCGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1656533 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||||||||| || |||||| | || |||||||| || || || || Sbjct 1656534 AGTGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGG 1656593 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | |||||| || || ||||||| |||| | || | ||||| | |||| || || Sbjct 1656594 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGC-TCCAC 1656652 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 ||| ||||| || | ||||| ||||| || ||||| ||||| |||||| || Sbjct 1656653 TTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATACCT 1656704 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| ||||| || | ||||| || | || || || || || || ||||| ||| Sbjct 1656702 CCTCCACGCAAACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 1656761 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||||||||| || |||||| | || |||||||| ||||| || || Sbjct 1656762 AGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGG 1656821 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||||| |||| | || | ||||| | | || || Sbjct 1656822 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCACC 1656881 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || || |||| || ||||||||||| ||||| Sbjct 1656882 TCCAGAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 1656928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424908785219952