Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_027990.1 Length=48211 Score E Sequences producing significant alignments: (Bits) Value seq1581 325 1e-84 >seq1581 Length=1050 Score = 325 bits (360), Expect = 1e-84 Identities = 277/339 (82%), Gaps = 7/339 (2%) Strand=Plus/Plus Query 16365 GATCCAGATAAGTGGCCGAAAGATGTTAAAAAGAGATCCGCGGTCAAACTGAGGAAGGAC 16424 |||||||||||||||||| |||| |||||| |||||||||||||||||||| |||| || Sbjct 2 GATCCAGATAAGTGGCCGGAAGACATTAAAA-GAGATCCGCGGTCAAACTGAAGAAGAAC 60 Query 16425 ACACGGCAGAAAATAAGATCCTACGCCACATGATTATCCACGGATACACCAACCAATATA 16484 |||| ||||||||||| | || |||||||||||| ||||||||||| || | | || Sbjct 61 ACACAGCAGAAAATAATGTGCTGCGCCACATGATTTGGCACGGATACACGAATGAGTTTA 120 Query 16485 TTGCACAAGAACGGTCAAAGTCATCGCATTATCTAAAGCAATTACGTGGGAAAATG---A 16541 ||||||||||||| ||||||||| || ||||| || | ||||||||||| ||| | Sbjct 121 TTGCACAAGAACGATCAAAGTCACCGGATTATGTACTGTCCTTACGTGGGAAGATGCGAA 180 Query 16542 AAAATCGTGACGAATTGAATTACCAAGCCACACCAGATGAATTAGCACAGCTAAAATACA 16601 ||| | |||||||| |||| ||||||||||||||||| | ||||||| ||||||| Sbjct 181 GAAAGC---ACGAATTGGATTATCAAGCCACACCAGATGAGCTGACACAGCTTAAATACA 237 Query 16602 ATCTCGATCACATGGATTGGCCTAACAATAAAGGAATTGCTAGTGCTATGGGACGCGACA 16661 | | | ||| ||| || ||||||| ||||||| ||||||||||| |||| || || | Sbjct 238 ACGTTGCTCATATGAATCGGCCTAATAATAAAGAAATTGCTAGTGTTATGCACCGTGATA 297 Query 16662 AAGATTGGGTACGCTGCATGCGAGTGAAGCTACGGGAGG 16700 | |||||||| ||||||||||||| |||||||||||||| Sbjct 298 AGGATTGGGTGCGCTGCATGCGAGAGAAGCTACGGGAGG 336 Score = 147 bits (162), Expect = 7e-31 Identities = 137/172 (80%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 18333 GGATGCAGCCAATGAAACACGGTGACAAGGTGTATTACCACCGCCACCATCGCGTTAAGC 18392 ||| |||| ||||||| ||||| || |||||| ||||||||||||| || |||||||| Sbjct 332 GGAGGCAGACAATGAAGCACGGCGATAAGGTGCATTACCACCGCCATCA---CGTTAAGC 388 Query 18393 AATCAGCCACATGGCTATGCTGGATCACTCGTGGTGATAGGCGAACAGTGATGATGAAAG 18452 | | || ||||||||||||||||||||||||| ||||||||| || ||||| |||| Sbjct 389 AGCCTGCTACATGGCTATGCTGGATCACTCGTGATGATAGGCGGGTAGCAATGATTAAAG 448 Query 18453 TTAAAGGCAGCCACAGGAATATTGAGGTGGCACCTAGTGATGTTGAGATCGG 18504 || |||| |||||| | ||||||||| | || || ||||||| || || Sbjct 449 TT-AAGGAAGCCACGCAACTATTGAGGTTTCTCCAAGATATGTTGATATTGG 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154144545980996