Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4563 150 2e-31 seq4472 95.1 2e-14 >seq4563 Length=5383265 Score = 150 bits (166), Expect = 2e-31 Identities = 584/910 (64%), Gaps = 21/910 (2%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || || || || || || || || |||| || || |||| || || || || || Sbjct 4594584 TAAATATTAGTAGTATACGGCTCGAAAGATTCGTTGTTGCCCATAATCTGAGCAGTAGAT 4594525 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 ||||||||||| || || | || || ||| || | ||| | || ||| || ||| Sbjct 4594524 GCTGTTGGCATAGGAGCAACCAGCAGGGAGTTCCGGACACCGTGCTTCTTTATCGACTCC 4594465 Query 110828 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTT---CCCACATGTCAAACTGA 110884 || || | |||||| || || || || | ||| |||||||||| |||| Sbjct 4594464 TTTAGCTTTTGCCAGTCCCAG---AGGTTCGTCGGAACTTTGTCCCACATGTCGTACTGC 4594408 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 | | |||| | | || |||||| | ||||| || | |||| | | ||| Sbjct 4594407 AAAATTCCTTTGCTTACCGGGCTTCCCTCATAAGTTTCGTATGGGCCTTCGATCTGAGCT 4594348 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 |||||||| || || |||| | | | || || ||||| || || | ||||| Sbjct 4594347 AATTCACAACTGGCTTCCAAAGCCCCATAGTAAATCGTTTCGAATATCTGCTGATTCAAG 4594288 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 111064 | |||||||| ||| ||| | | || | ||| ||| |||| || | || Sbjct 4594287 AGGCTCGCTTCATCACTTTCATATGGGAATCGCATGAGAATTAATGCATCAGCAAAGCCC 4594228 Query 111065 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT--CAACGG 111122 ||||| || | || | || | || | || ||| ||||| | || ||| || ||| Sbjct 4594227 TGAACTCCGATGCCCACGGGGCGATGCCTCAAATTGGACTTCCTTGCC-TCTGGCAGCGG 4594169 Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182 |||||| || | || || | ||| |||||| ||||||| |||| |||| ||| | Sbjct 4594168 -ATAAAAGTTGATATCGATTATCTTGTTGAGATTTCTGGTAACCGTCTTGGTGACTTCCT 4594110 Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAAGGGCGA 111239 ||||||| |||| | || || ||| ||||| || | ||| || | Sbjct 4594109 TTAGTTTTTTGAAATCGTATGT------CTTTTCCGGTGTGACAAACATGTTAAGAGCAA 4594056 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | |||||||| || ||||| || |||||||| | |||||| | ||||||||| | Sbjct 4594055 TGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGAGTACTCGACAATTTCTGTGC 4593996 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | ||||| | ||||| || || | ||||| |||||||||||| ||||||| |||| Sbjct 4593995 ACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTTACTCTTCCTGTTGCAGGCAT 4593936 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-A 111418 ||||| ||||||| || || | || || ||| |||| || | ||| || ||| | Sbjct 4593935 CCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGCTTCAATAATGGCGAACCATA 4593876 Query 111419 ACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGG 111478 | | | || || | |||||| || ||||| ||| || || || | Sbjct 4593875 AGGATTGAGCCT-TAACTGTTCGGTTGGCACGGCCCTCTTGCTCATATTTCACATATAAC 4593817 Query 111479 GCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGA 111538 |||||| || || ||| | ||| || || || |||| || || | ||| Sbjct 4593816 TTTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGGGCATTTGTGCGGGCACATAAGG 4593757 Query 111539 GACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 111598 ||||| | ||| |||| || || ||||||||||| || || ||||||| || || Sbjct 4593756 GACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAGATCAGGTATCCACAAGGCGTAA 4593697 Query 111599 AAGAGATCTC 111608 || ||||||| Sbjct 4593696 AAAAGATCTC 4593687 >seq4472 Length=2353741 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/205 (72%), Gaps = 9/205 (4%) Strand=Plus/Plus Query 182675 AGCGTCCCGAACATTCTTACA-TTTACCGCGAAGTGGGAACACACCGTAGTGATCACGAC 182733 ||| || || |||||| ||| |||||| | ||| ||||| || ||||| || ||||| Sbjct 1766689 AGCCTCACGCACATTCA-ACAGTTTACCCCTAAGCGGGAAAACTCCGTAAAAATTACGAC 1766747 Query 182734 CAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGA 182793 ||| ||| ||||| | || || | | || || || || ||||| |||| ||||| Sbjct 1766748 CAATGACGCCCAGACCAGAGACAGCCAAAGACTTGGCTGAGTCTCCCTCAGTGAGAATGA 1766807 Query 182794 GAGTACACTT--TCCAGATTGTGCCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAAT 182851 |||| || || || | | |||| ||| |||| ||| ||||| |||| ||||||||| Sbjct 1766808 GAGTGCAGTTAATCGAATTCTTGCC--ACCGGCCTCGTTAGCGTCCTCCAGCTTGGGAAT 1766865 Query 182852 ACCGGTAATTTTG---GACTTGCGA 182873 ||| |||| ||| || |||||| Sbjct 1766866 ACCCTTAATCTTGCTCGATTTGCGA 1766890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627993171921600