Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4563 138 1e-27 seq4471 127 3e-24 >seq4563 Length=5383265 Score = 138 bits (152), Expect = 1e-27 Identities = 637/999 (64%), Gaps = 39/999 (4%) Strand=Plus/Minus Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 ||| ||||| || || || ||||| || | || ||||| |||| || || || || || Sbjct 4594585 ATAAATATTAGTAGTATACGGCTCGAAAGATTCGTTGTTGCCCATAATCTGAGCAGTAGA 4594526 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC 118300 ||||| ||||| || || | || ||| ||| |||| ||| | | | | || || Sbjct 4594525 TGCTGTTGGCATAGGAGCAACCAGCAGGGAGTTCCGGACACCGTGCTTCTTTATCGACTC 4594466 Query 118301 CTTGAGA----GC--GTCCCAG----TCGTAGTTGAGCTTTGTCTCCCCCTGCCACATAT 118350 ||| || || ||||||| |||| | || ||||||| |||||| | Sbjct 4594465 CTTTAGCTTTTGCCAGTCCCAGAGGTTCGTCG--GAACTTTGTC--------CCACATGT 4594416 Query 118351 CAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAA 118410 | |||| | || |||| | | || ||||||| | || || |||||||| || | Sbjct 4594415 CGTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCATAAGTTTCGTATGGGCCTTCGA 4594356 Query 118411 CCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAG 118470 || || ||||| | || || || | || | | || || ||||| || || | Sbjct 4594355 TCTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATAGTAAATCGTTTCGAATATCTGCT 4594296 Query 118471 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCG 118530 ||||| | || || || ||| | | || ||| | ||| ||| |||| | Sbjct 4594295 GATTCAAGAGGCTCGCTTCATCACTTTCATATGGGAATCGCATGAGAATTAATGCATCAG 4594236 Query 118531 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCT 118590 | | || || || |||| ||| | |||||||| |||| ||| ||||||| || ||| Sbjct 4594235 CAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTCAAATTGGACTTCCTTGCC-TCT 4594177 Query 118591 C-CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTG 118649 || |||||||| || ||||||| | | | || |||||| |||| || ||| ||| Sbjct 4594176 GGCAGCGGATAAAAGTTGATATCGATTATCTTGTTGAGATTTCTGGTAACCGTCTTGGTG 4594117 Query 118650 ATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGA 118706 | ||| | || |||| | |||| | |||| ||| ||||| || | | Sbjct 4594116 ACTTCCTTTAGTTTTTTGAAATCGTAT------GTCTTTTCCGGTGTGACAAACATGTTA 4594063 Query 118707 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 118766 || || || || |||| ||||| || | |||||||| | |||||| | |||| Sbjct 4594062 AGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGAGTACTCGACAATT 4594003 Query 118767 TCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 118826 || ||||||||||| | ||||||||||| | |||| || || ||| |||| Sbjct 4594002 TCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTTACTCTTCCTGTTG 4593943 Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 118886 || ||||||||| | ||||| || || | || || ||| ||| | | | ||| || Sbjct 4593942 CAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGCTTCAATAATGGCG 4593883 Query 118887 TTCCAGA--CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTG 118944 ||| | || | ||| || || |||||| || ||||||| ||| || || Sbjct 4593882 AACCATAAGGATTG--AGCCTTAACTGTTCGGTTGGCACGGCCCTCTTGCTCATATTTCA 4593825 Query 118945 TGTAGAGGGCTTCAAACTCTTCACCCACGGCCTC-TGAGAGCCCTGGTGCCTTATCTGGG 119003 || | |||||| || || ||| | || ||| || || || || | ||| Sbjct 4593824 CATATAACTTTTCAAATTCATCGCCCCATACATCGTGA-AGGCCAGGGCATTTGTGCGGG 4593766 Query 119004 CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 119063 || | || ||||| | ||| |||| || || |||||||| || || || ||||| Sbjct 4593765 CACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAGATCAGGTATCCAC 4593706 Query 119064 AGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTT-CATCCCCCTGATTGAGACGCAACTC 119122 | || | || ||||| || |||| |||| | | || || || | | || Sbjct 4593705 AAGGCGTAAAAAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGTGTTTTTCTTG-AGTTC 4593647 Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 119161 || ||| || | || ||| | |||||| || |||||||| Sbjct 4593646 CAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTA 4593608 >seq4471 Length=3711889 Score = 127 bits (140), Expect = 3e-24 Identities = 521/809 (64%), Gaps = 12/809 (1%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| ||||||||||||||||||||| ||||||| ||| ||||||| Sbjct 604332 TACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATG 604273 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 |||| || |||||||| | ||| | || | || |||| || || | ||| Sbjct 604272 AAATTGAAAGGGTTCTTGGTGTTGTAGATCTTTCCAACACCAAGCTCCACCAGCAAACGG 604213 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | ||| |||| ||||||| |||||| ||| | ||||| ||||| | ||| Sbjct 604212 TCTGCGACAAACTCGATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAGTTTACG 604153 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 || || || || | |||| ||| ||||||| |||| || || || | || || Sbjct 604152 GGAAGGGCATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATAATCTCGATG 604093 Query 129968 ATGGTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTCCTG 130026 ||| ||| |||| ||| | | || || ||| | |||||||| || Sbjct 604092 ATGCGCTCTCGCTTTGGTC-GCTGCACGAGGTGCTGGAACATCAAGACGGCAAAGTCGCA 604034 Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| | || ||||| ||||| || ||||| || ||||| ||| || ||||| || || Sbjct 604033 GTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGTCAGGCCCGGCATCAGGCC 603974 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || ||||| | ||||||||| | || ||| |||||||| ||||| || Sbjct 603973 ACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAAGAAGATGCCCTCTACGGC 603914 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA-AACCACTTCATCG 130205 || || || | | ||||| |||| | ||| ||| || | | ||| | || Sbjct 603913 GGCAAAGGCGATAATTCGCTCTCCAAAATTGGCTGAC-TTGGATGAGATCCAGGAAAGCG 603855 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 130265 |||| | |||||| || | | ||| | |||| ||| || | || || | || | Sbjct 603854 CCCAGTCCGCCTTGCGCTTTACAGCCGGCATCGTCTCGATGGCATTGAACAGGTACTCC- 603796 Query 130266 TTTCTGAT--GGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323 ||||| |||||| |||||| | || || || ||| ||||| || || Sbjct 603795 -CGCTGATGCGGATCTCGGATGTATGTGTCGATCAGGACACTATACATTTCGGAGTGCAC 603737 Query 130324 CATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATC 130383 |||| | | ||| | ||||||| |||| || || | ||||| ||||| | Sbjct 603736 GTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGCCTCAGTGATCTGAACCTCCT- 603678 Query 130384 TGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 130442 || |||| | | | | ||||| || ||||||||||| | ||||| || |||| Sbjct 603677 GGCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATCGGAAGCGGCAAAGAAGGCCA 603618 Query 130443 GGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGT-CGTCAAGATCC 130501 | | | ||||| | | || | || || ||| | ||||| |||| |||||| Sbjct 603617 GCACGTGTGAGATGAAGTGACGCTCGTCGTCCTTTAGGCGATGCCAGTCCGTC-AGATCC 603559 Query 130502 TTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 || || ||||| || |||||| ||||||| Sbjct 603558 TTGGACAGATCCACTTCCTCCACAGTCCA 603530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618396965243760