Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4720 102 1e-16 seq4472 86.0 7e-12 seq4014 84.2 3e-11 >seq4720 Length=6167446 Score = 102 bits (112), Expect = 1e-16 Identities = 275/417 (66%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 9518 ATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 9577 |||| ||||| |||||||| || || | || || | || || ||||| || || || Sbjct 103521 ATCTGTCGATCGAAGCGACCCGGCCGCATAAGGGCCTTGTCGAGAATATCTACACGGTTA 103462 Query 9578 GTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGT 9637 || || || | || || | | ||| ||| ||||||||||||||| || |||| Sbjct 103461 GTGGCCGCCAGCACCACCACATTCGTTGTTGTATTAAAACCATCCATCTCAACCAGAAGT 103402 Query 9638 TGGTTAATAGTTTGTTCCCGTTCATCATT-----CGCTGG-CATACCACCAGCACTGCGT 9691 ||||| | || | ||| | ||| | || || | | || ||| ||| Sbjct 103401 TGGTTGAGGGTATTCTCCTGCTCAGAGTGGCCGCCGAAGGTCTTTCCTCCA------CGT 103348 Query 9692 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 9751 | | ||||| || || || || ||||| || | |||||| ||| || | ||| || Sbjct 103347 TTCCGACCCACAGCGTCGATTTCGTCAATAAATAGGATGCAGGGTGCATGCTTGCGGGCC 103288 Query 9752 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9811 | | || | || || |||||| | ||||| || ||||||||||| | ||| | | Sbjct 103287 ATGGCGAACATGTCACGAACACGCGAAGGTCCCACGCCCACAAACATCTCGAGAAACTCT 103228 Query 9812 GCGGCGGAACATTGG-ATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9870 | | |||| || | |||||||| ||||||| ||| || || |||| ||| ||||| Sbjct 103227 GAGCCGGA-CACGGTTATGAAGGGCACATTAGCTTCGCCGGCGGTGGCCTTGGCCAGAAG 103169 Query 9871 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 || |||||||| || || || | || | ||| || ||| ||||||||||| Sbjct 103168 CGTTTTACCCGTGCCGGGTGGGCCGGTTAGCATGGCCCCCTTTGGTATCTTGGCGCC 103112 >seq4472 Length=2353741 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 169328 GCATCGCGAACATTCTTACACTTC-CCACGAAGAGGGAAGACACCGTAGTGATCACGACC 169386 || || || |||||| ||| || || | ||| ||||| || ||||| || |||||| Sbjct 1766690 GCCTCACGCACATTCA-ACAGTTTACCCCTAAGCGGGAAAACTCCGTAAAAATTACGACC 1766748 Query 169387 AACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAG 169446 || |||| ||||| | ||| || | || ||| || ||||| ||||| |||| ||||| Sbjct 1766749 AATGACGCCCAGACCAGAGACAGCCAAAGACTTGGCTGAGTCTCCCTCAGTGAGAATGAG 1766808 Query 169447 CGTACATTT--TCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATA 169504 || || || || | | |||| ||| |||| ||| || || |||| ||||||||| Sbjct 1766809 AGTGCAGTTAATCGAATTCTTGCC--ACCGGCCTCGTTAGCGTCCTCCAGCTTGGGAATA 1766866 Query 169505 CCAGTAATTTTG 169516 || |||| ||| Sbjct 1766867 CCCTTAATCTTG 1766878 >seq4014 Length=1374326 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 7238 TACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAACGAGGAG 7297 ||||||||||| ||||||||| ||| ||||||||| |||||| || |||||||| || Sbjct 858080 TACCAAGCCTCTACTTCGGAGCTGTATGGTAAAGTAGTAGAAACGCCCCAAAACGAACAG 858021 Query 7298 ACACCCTTCTACCC 7311 ||||| |||||||| Sbjct 858020 ACACCGTTCTACCC 858007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583224739901040