Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4563 114 1e-20 seq4471 114 1e-20 seq2845 104 3e-17 >seq4563 Length=5383265 Score = 114 bits (126), Expect = 1e-20 Identities = 344/529 (65%), Gaps = 4/529 (1%) Strand=Plus/Minus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 ||||||| ||| || || || |||| |||||| || ||||| |||||||||||| Sbjct 4594053 GATGCCAAGTTACAAACTGCAATCTCATCCGGGGAGGAGTACTCGACAATTTCTGTGCAC 4593994 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || ||| | || |||||||| | |||| |||||| |||||| ||| ||||| ||| Sbjct 4593993 AAGTTACTGCATTTAATGGTGCCAACATTCTGCTGGTTACTCTTCCTGTTGCAGGCATCC 4593934 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||| || ||| ||||| | || || || || || | | || | || ||| | | Sbjct 4593933 TTGAAGAGCATATACGGATTTCCAGTTTCCACTTGTGCTTCAATAATGGCGAACCATAAG 4593874 Query 79237 TCCCGGGCCCGGACAACCTTC--TTGTACCGACCCTGTGCGACGTACGTCCGGTACAACT 79294 | ||| || ||| ||| || |||| | | || || || |||| Sbjct 4593873 GATTGAGCCTTAAC--TGTTCGGTTGGCACGGCCCTCTTGCTCATATTTCACATATAACT 4593816 Query 79295 CGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354 | || | || || | |||||| | ||||| ||||| | |||||||||||| ||| Sbjct 4593815 TTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGGGCATTTGTGCGGGCACATAAGGG 4593756 Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 ||| || | | ||| || | |||||| || || || ||||||| ||| | Sbjct 4593755 ACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAGATCAGGTATCCACAAGGCGTAAA 4593696 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 | || || ||| || |||| || | ||| ||| || || ||||| || | Sbjct 4593695 AAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAATTCAA 4593636 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 || || | |||||| |||||||| || || || || | || ||||||||||| | Sbjct 4593635 AGACATCAGAGTGCCAGGGCTCCAGGTAAATAGCAAAGGCTCCTGGACGCTTGCCGCCTC 4593576 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCAC 79583 |||| | || || || || ||| ||||| || | |||||||| || Sbjct 4593575 CCTGATCCACATAACGCGCAACGTTATTGAAGACCCTCAGCATGGGAAC 4593527 Score = 91.5 bits (100), Expect = 2e-13 Identities = 187/278 (67%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 19421 GTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAA 19480 || || ||||| | |||||||| ||| || | || || | ||||| |||||||| Sbjct 4593527 GTTCCCATGCTGAGGGTCTTCAATAACGTTGCGCGTTATGTGGATCAGGGAGGCGGCAAG 4593586 Query 19481 CGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTC 19540 || || | || || || ||||| ||||| |||||| | || ||| | || || || Sbjct 4593587 CGTCCAGGAGCCTTTGCTATTTACCTGGAGCCCTGGCACTCTGATGTCTTTGAATTTCTG 4593646 Query 19541 GAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTG 19600 ||||| ||| || | || |||| ||| || || || || |||||| Sbjct 4593647 GAACTCAAGAAAAACACTGGCAAGGAAGAGAATCGCGCCCGAGATCTTTTTTACGCCTTG 4593706 Query 19601 TGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGC 19660 ||||| || || || |||||| | || ||| | | ||| ||| ||| |||||| Sbjct 4593707 TGGATACCTGATCTTTTCATGAAACGTGTAGAGGCCAATGGAGATTGGTCCCTTATGTGC 4593766 Query 19661 CCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 |||||| ||||||||||||| | ||| || | ||||| Sbjct 4593767 CCGCACAAATGCCCTGGCCTTCACGATGTATGGGGCGA 4593804 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 78535 TAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAG 78594 || || || || || ||||||||||||| |||||||| ||||| ||||| || || || Sbjct 4594584 TAAATATTAGTAGTATACGGCTCGAAAGATTCGTTGTTGCCCATAATCTGAGCAGTAGAT 4594525 Query 78595 GCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACC 78654 || || ||||| || || ||||| || || ||||| | ||| ||| |||| ||| || Sbjct 4594524 GCTGTTGGCATAGGAGCAACCAGCAGGGAGTTCCGGACACCGTGCTTCTTTATCGACTCC 4594465 Query 78655 TTTAG 78659 ||||| Sbjct 4594464 TTTAG 4594460 >seq4471 Length=3711889 Score = 114 bits (126), Expect = 1e-20 Identities = 529/821 (64%), Gaps = 25/821 (3%) Strand=Plus/Plus Query 59612 TTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCT 59671 ||| |||||| | || ||||| | || || || || |||| ||| ||| | || Sbjct 603523 TTCCTTCTGGACTGTGGAGGAAGTGGATCTGTCCAAGGATCTGACGGACTGGCATCGCCT 603582 Query 59672 CAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGG 59731 || ||||||||| || |||||| || ||||||||||| || || ||||| Sbjct 603583 AAAGGACGACGAGCGTCACTTCATCTCACACGTGCTGGCCTTCTTTGCCGCTTCCGATGG 603642 Query 59732 AATTGTGATGGAAAATATAGACATGAAC--TTTTCCAAGGATGTCCAGATTGCCGAGGCC 59789 ||| |||| || || | | ||| | ||| | |||| || ||||| | ||||| Sbjct 603643 AATCGTGAACGAGAACCTGGT--TGAGCGATTTAGCCAGGAGGTTCAGATCACTGAGGCA 603700 Query 59790 CGGTCGTTCTACGCGTATCAG-TCGTTCAACG-AGTCTATCCACTCCGAGACGTACTCGC 59847 || | ||||||| | ||| ||| ||| | | | |||||||| | ||| Sbjct 603701 CGCTGCTTCTACGGTTTCCAGATCG--CAATGGAAAACGTGCACTCCGAAATGTATAGTG 603758 Query 59848 TCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAG 59907 || ||||||| | | || |||||| | || || |||||| |||||| | Sbjct 603759 TCCTGATCGACACATACATCCGAGATCCGCATCAGCGGGAGTACCTGTTCAATGCCATCG 603818 Query 59908 AGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAG-TCCTGG- 59965 ||||| || || || || | || || || ||||| | ||||| ||| | Sbjct 603819 AGACGATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCGCTTTCCTGGATCTCATCCAAGT 603878 Query 59966 -AGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTG 60024 ||| |||| | | || | || || ||||| ||| || || |||||||| | Sbjct 603879 CAGCCAATTTTGGAGAGCGAATTATCGCCTTTGCCGCCGTAGAGGGCATCTTCTTTAGCG 603938 Query 60025 GCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCT 60084 || ||| ||||||||||||| || || |||||||| ||||||||||||| |||| Sbjct 603939 GCAGCTTCGCCTCTATTTTCTGGCTAAAGAAACGTGGCCTGATGCCGGGCCTGACATTCT 603998 Query 60085 CCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATT 60144 ||||||| || || ||||||||||| ||| | || || ||||| || | | | | Sbjct 603999 CCAACGAACTTATATCCCGGGACGAAGGCTTGCACTGCGACTTTGCCGTCTTGATGT-TC 604057 Query 60145 CA-CACCTATTGGAAAAATGCCCTTCCAAG-GATATTCA-CAAGATTGTTCAGTGGGCTT 60201 || ||||| || | | || | || | ||| | ||||| | | || Sbjct 604058 CAGCACCTCGTGCAGCGA--CCAAAGCGAGAGCGCATCATCGAGATTATCCGCGACGCGG 604115 Query 60202 GTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAAC-TCATAGGTATGGAC 60260 | | ||| |||||| | ||||| || ||||| | |||| | || || ||| | Sbjct 604116 TGGCCATTGAGCAGGAGTTCCTTACAGATGCCCTTCC-CGTAAACTTGATCGGCATGAA- 604173 Query 60261 GCTGGAGA---AATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTT 60317 | | || ||| | |||||||| |||||||||| ||||| | ||| || || Sbjct 604174 --TTGCGACCTGATGTCCCAGTACATCGAGTTTGTCGCAGACCGTTTGCTGGTGGAGCTT 604231 Query 60318 GGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTG 60377 || | ||| || ||| | || ||||||||| | | ||||||| |||||| || Sbjct 604232 GGTGTTGGAAAGATCTACAACACCAAGAACCCTTTCAATTTCATGGAGATGATCTCGCTG 604291 Query 60378 GAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 || || ||||| |||||||| |||||| ||| || || || Sbjct 604292 GACGGAAAGACAAACTTCTTCGAGAAGAAGGTGGGCGAGTA 604332 >seq2845 Length=43607 Score = 104 bits (114), Expect = 3e-17 Identities = 186/266 (70%), Gaps = 12/266 (5%) Strand=Plus/Minus Query 53830 GACTCGATGGGGAACGATGCGGCGATCGTCCAGGCCGCCCGCGTTTCTTACGGGGCCGGA 53889 |||| |||||| ||||| | || || || ||||| ||||||||||| |||||| ||| Sbjct 31710 GACTATATGGGGGACGATTCCGCCATTGTGCAGGCGGCCCGCGTTTCCTACGGGCGCGGC 31651 Query 53890 AC---CAAGTCGGTCAGCGACGAT--CGGGCTCTGATCCGCTATCTCATGCGCCACAAGC 53944 || |||| ||| || ||| |||||| ||||||||| || ||||| || | Sbjct 31650 ACGCGCAAG---GTCTCGGAAGATGCCGGGCT--GATCCGCTACCTGATGCGGCATCGTC 31596 Query 53945 ACACGACGCCGTTTGAGATGGTCGAATTCAAGTTTCACGTGCGCGCGCCCATCTACGTGG 54004 | | |||||||||| ||| ||| | || |||||||| ||| |||| || | Sbjct 31595 ATTCCTCGCCGTTTGAAATGTGCGAGATGAAATTTCACGTCAAACTGCCGATCTTTGTAG 31536 Query 54005 CGCGTCAGTGGCTCCGTCACCGGACTGCGTCCGTCAACGAGATGAGC-GCTCGTTACTCC 54063 |||| |||||| |||| ||||| | || ||| ||||| || | || ||||| ||| Sbjct 31535 CGCGGCAGTGGATCCGCCACCGTATGGCCAGCGTGAACGA-ATATTCTGCCCGTTATTCC 31477 Query 54064 ATCGTCGACACGGGCTTCTTCCTCCC 54089 || |||||| | |||| | |||| Sbjct 31476 ATTCTCGACAGTGAATTCTACATCCC 31451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548490887454240