Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4472 132 5e-26 seq4563 91.5 2e-13 >seq4472 Length=2353741 Score = 132 bits (146), Expect = 5e-26 Identities = 192/271 (71%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| || || | ||| ||||| || | | ||| |||||||| || Sbjct 1765754 GTGAAAATGTAACGAGCACTGGCGGAATCTTTGCCTCCTGTCAAACGAGTACCGAACTGA 1765813 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||||||| || || | ||||| || ||||||||||| || |||| ||||| Sbjct 1765814 CCGCGTGGCTCCAACAGATTAATATTGTTAGCACCCACAAAGTTCTGGGCCAGATTGACG 1765873 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || | |||| || ||||| || |||| | ||| ||||| | || Sbjct 1765874 ATGGTCATCTGTAACGAAACCTCTCCGTGGTGGTAGGCCGACATCTCGGCCACTGAACCG 1765933 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 | ||||| |||||||||| || | | ||| |||||| ||| | | | || ||| Sbjct 1765934 GAAAGCTGGGCCACCTTCACCTCCCGCTTGTCGTTTCTCTTGAAGCACGTAAACATGACC 1765993 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCA 117575 || || |||| ||| ||||| |||||| ||| Sbjct 1765994 TTTCGTTGACCTGGTTTCAGGCCATCCACCA 1766024 >seq4563 Length=5383265 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||||||||| || || || |||||||| || || || |||||||| ||||||||| Sbjct 4594490 CGGAACTCCCTGCTGGTTGCTCCTATGCCAACAGCATCTACTGCTCAGATTATGGGCAAC 4594549 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTA 55578 ||||| | ||||||||||| || || || || || Sbjct 4594550 AACGAATCTTTCGAGCCGTATACTACTAATATTTA 4594584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547182168370800