Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4475 172 6e-38 seq4563 167 3e-36 seq4042 167 3e-36 seq4472 143 3e-29 seq2845 89.7 6e-13 >seq4475 Length=5362458 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || ||||| || || ||| || Sbjct 1656700 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTGGAGCCATCC 1656641 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || |||||||||||||| || |||||||||||| Sbjct 1656640 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCAGACCAG 1656581 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| ||||| |||| || || || | ||||| || Sbjct 1656580 CAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGCACACTGTCCGACTACAAC 1656521 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| ||||| ||||| | || | ||||| ||||| ||| Sbjct 1656520 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGCGGAGGA 1656473 Score = 152 bits (168), Expect = 6e-32 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| | || || ||||| || ||||| ||||| ||| | Sbjct 1656929 AATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACTCTGGAGGTGGAGCCTTC 1656870 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| ||||||| || || || ||||||||||| || |||||||| || Sbjct 1656869 GGACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCAGATCA 1656810 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| ||||| |||| || || || | || || || Sbjct 1656809 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACTCTTTCCGATTACAA 1656750 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||| ||||||||||| Sbjct 1656749 CATCCAGAAGGAGTCCACTCTTCA 1656726 >seq4563 Length=5383265 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || ||||||||||| || | Sbjct 4507367 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTCG 4507308 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || || || ||||||||||| || |||||||||||||| ||| Sbjct 4507307 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 4507248 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || |||| || ||||| | ||||||||| Sbjct 4507247 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAT 4507188 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || |||||| | || | || ||||||| || ||||| Sbjct 4507187 ATTCAGAAAGAGTCCACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 4507141 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || ||||||||||| || || | ||||| ||| | Sbjct 1838181 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 1838122 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||||||||| || ||||||||||| ||||| ||||| ||| Sbjct 1838121 GACACCATCGAGAATGTGAAGGCTAAAATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 1838062 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| || || || | ||||| || Sbjct 1838061 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 1838002 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| | || | ||||| || ||||| Sbjct 1838001 ATCCAGAAGGAGTCGACCCTTCACTTGGTGCTCCGTCTGCGTGGTGG 1837955 >seq4042 Length=640736 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||||||||| || ||| | ||||||||| | Sbjct 503151 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 503092 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || |||||||||||||| || ||||| ||| Sbjct 503091 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGATCAG 503032 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||| ||||| || ||||| | |||||| | | ||||| ||| Sbjct 503031 CAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAAT 502972 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||| | ||| | ||| ||||||| |||||||| Sbjct 502971 ATTCAGAAGGAGTCTACTTTGCATTTGGTCCTGCGTCTACGCGGTGG 502925 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| |||||||||||||| || ||| | ||||||||| | Sbjct 503379 ATGCAGATCTTTGTGAAGACCCTTACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 503320 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||||||||| || ||||| ||| Sbjct 503319 GACACCATCGAGAACGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 503260 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||| ||||| || ||||| | |||||| | | ||||| ||| Sbjct 503259 CAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAAT 503200 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||| | ||| | || | ||||| ||||| || Sbjct 503199 ATCCAGAAGGAGTCTACTTTGCATTTGGTGCTCCGTCTGCGCGGAGG 503153 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||||||||| || ||| | ||||||||| | Sbjct 503607 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 503548 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||||||||| || ||||| ||| Sbjct 503547 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 503488 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||| ||||| || ||||| | |||||| | | ||||| ||| Sbjct 503487 CAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAAT 503428 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||| | ||| | || | ||||| || ||||| Sbjct 503427 ATCCAGAAGGAATCTACTTTGCATTTGGTTCTCCGTCTGCGTGGTGG 503381 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || |||||||| || || | || |||||| | Sbjct 503835 ATGCAAATTTTCGTGAAGACTTTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCTTCC 503776 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||||||||| || ||||| ||| Sbjct 503775 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 503716 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||| ||||| || ||||| | |||||| | | ||||| ||| Sbjct 503715 CAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACCTTGTCCGACTACAAT 503656 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||| | ||| | || | ||||| ||||| || Sbjct 503655 ATCCAGAAGGAGTCTACTTTGCATTTGGTGCTCCGTCTGCGCGGAGG 503609 >seq4472 Length=2353741 Score = 143 bits (158), Expect = 3e-29 Identities = 290/428 (68%), Gaps = 8/428 (2%) Strand=Plus/Minus Query 31979 TGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACC 32038 ||| ||| ||||| || || || || ||||| || | | ||| |||||| ||| Sbjct 1766024 TGGTGGATGGCCTGAAACCAGGTCAACGAAAGGTCATGTTTACGTGCTTCAAGAGAAACG 1765965 Query 32039 TGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATC 32098 | | || |||||||||| ||||| || || | ||||| ||| ||||||| | Sbjct 1765964 ACAAGCGGGAGGTGAAGGTGGCCCAGCTTTCCGGTTCAGTGGCCGAGATGTCGGCCTACC 1765905 Query 32099 ACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTG 32158 ||||||| |||| ||| | ||| ||||| ||||| || || ||||||||||| |||| Sbjct 1765904 ACCACGGAGAGGTTTCGTTACAGATGACCATCGTCAATCTGGCCCAGAACTTTGTGGGTG 1765845 Query 32159 CAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCA 32218 | || || | || | | |||||| || ||||| || || || | | || |||| Sbjct 1765844 CTAACAATATTAATCTGTTGGAGCCACGCGGTCAGTTCGGTACTCGTTTGACAGGAGGCA 1765785 Query 32219 AGGATGCTGCGAGCTCCCGTTACATCTTCACCC----GTCTCGCACCTTCGACGCGCAAG 32274 | ||| | || || | |||||||| |||||| ||||| |||| ||| || Sbjct 1765784 AAGATTCCGCCAGTGCTCGTTACATTTTCACCATAATGTCTC---CCTT-GACTCGACTT 1765729 Query 32275 ATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTC 32334 |||| | |||| | ||||||| | |||| | ||| | | ||||| || || | | Sbjct 1765728 ATTTACCACCCCTTGGACGATCCCCTGCTGGACTACCAAGTGGATGATGGCCAAAAGATT 1765669 Query 32335 GAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATC 32394 || || ||| ||| ||| | | |||||| | ||| | ||||| || ||||||||| Sbjct 1765668 GAACCTCTGTGGTACCTTCCAATCATACCGATGGTGTTGATAAACGGAGCGGAAGGCATC 1765609 Query 32395 GGAACGGG 32402 ||||| || Sbjct 1765608 GGAACTGG 1765601 >seq2845 Length=43607 Score = 89.7 bits (98), Expect = 6e-13 Identities = 177/258 (69%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 143299 GGCATGTAGAATTCGTCCGGC-AAAATTGAGTAACGGGCCGAAACCTCGTTCACAGAGGC 143357 || ||||||||||| | | | | ||| || |||||||| ||| |||||||| ||| Sbjct 31451 GGGATGTAGAATTC-ACTGTCGAGAATGGAATAACGGGCAGAATATTCGTTCACGCTGGC 31509 Query 143358 GGTACGGTGACGCAACCACTGGCGCGCCACGAAAATAGGACACTTGATATGAAACTTGAA 143417 ||||||| || | |||||| ||||| || || || || |||| ||||| || | Sbjct 31510 CATACGGTGGCGGATCCACTGCCGCGCTACAAAGATCGGCAGTTTGACGTGAAATTTCAT 31569 Query 143418 ATCGACCATCTCAAATGGCGTCGTGTGACGATGCCTCATGAGATAACGGATGAGACCACG 143477 ||| ||| ||||| |||| | |||||||||| ||| || || ||||| || || Sbjct 31570 CTCGCACATTTCAAACGGCGAGGAATGACGATGCCGCATCAGGTAGCGGATCAGCCCGGC 31629 Query 143478 GTCATCAGATACGCTCTTG---GTCCCTTGAGCGTAACTGACGCGAGCAGCCTGAACAAT 143534 || || || || |||| || || | |||| ||||| || ||||| ||||| Sbjct 31630 ATCTTCCGAGAC---CTTGCGCGTGCCGCGCCCGTAGGAAACGCGGGCCGCCTGCACAAT 31686 Query 143535 CGCTGCGTCATCACCCAT 143552 || | || || ||||| Sbjct 31687 GGCGGAATCGTCCCCCAT 31704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570275140559520