Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq4563 179 3e-40 >seq4563 Length=5383265 Score = 179 bits (198), Expect = 3e-40 Identities = 424/632 (67%), Gaps = 14/632 (2%) Strand=Plus/Minus Query 29838 TGGGAAAGGGTC-TGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGG 29896 |||||||||||| ||| | | | || ||||| ||| || || || || | | ||| Sbjct 3137488 TGGGAAAGGGTCGTGGTGTACGT-TCCAGCTGCTCCTTAAGGGGCTCTACATGGTTCAGA 3137430 Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956 |||||||| | ||| |||| | |||| ||||| || ||||| | || || || || || Sbjct 3137429 TAGACGTGTGTGTCGCCCATGGTGTGCACAAAGTCGCCCGGCTTCAGACCCGTCACATGG 3137370 Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016 || |||||||| || ||||| | |||| ||||||||| ||||| || || | |||||| Sbjct 3137369 GCGATCATGTAGGTAAGGAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAAGCCCATG 3137310 Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC--TCCGTCGCT----CACGTAAAAC 30070 || | ||| ||||||||||| ||||| ||||| | || || ||||| ||| Sbjct 3137309 TCGGCGCTCCTTTGGTAGAGCTGGCACGAAAGCTCATTTCGGGTCTGTGAGACGTAGAAC 3137250 Query 30071 TGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCG 30130 || || | ||||||||| ||||||||||| | ||| || ||||| || Sbjct 3137249 TGCGCCAGGCAGTGGCACGGCGGAAGAGCCATCTTTGGAATGTCCAATGGATTCCACGCT 3137190 Query 30131 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGC 30190 ||| ||||| |||||||| ||||| ||| | ||| ||| | | | ||| Sbjct 3137189 GACATAATGATACGCCTGTCCGAAGGGTTATTCTTAATGGTGTCGATCACTTGACGCAAT 3137130 Query 30191 TGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATG 30249 || || | ||| | || | || || | | || ||| |||||| || || || || Sbjct 3137129 TGGTCGATGCCCTTGCCGGCATAATCGTCTTCGCAGCTCC-CGTACTCCGCACCAAAGTG 3137071 Query 30250 CCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC--CTCTTCCCTGTGCTCGAAGCCC 30307 || ||||||||| ||||||||||| |||| ||| || | || || || || ||| Sbjct 3137070 CCGCCACTGGAATCCGTACACCGGACCCAAGTCGCCAACGGCTCGCTCTGTGTGA--CCC 3137013 Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAG 30367 ||||||||| || || |||| | ||| | |||||||| | || |||| | Sbjct 3137012 AGCTTGTCCAAGAACTCCCTGGTGCTGTTCCCATCCCAGATATGCACGTTCTTCGCCTGC 3136953 Query 30368 AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTC 30427 ||| |||| || ||| || || ||||| || |||||||| | || || Sbjct 3136952 AGCAGCTTGGCGTCTGTCTTGCCCGCCACAAACCAGAGTAGCTCCTCGGCCACAGCGCGG 3136893 Query 30428 CAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 | ||||| | ||| || || | |||||||| Sbjct 3136892 AAGAAGACGCGCTTTGTGGTTAATAGGGGAAA 3136861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406285907863032