Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4475 109 3e-19 seq4042 98.7 6e-16 seq4563 89.7 3e-13 >seq4475 Length=5362458 Score = 109 bits (120), Expect = 3e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || |||||| |||||| || ||||| ||||| ||||| || || | ||||| Sbjct 1656720 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCG 1656779 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || ||||| || || | |||||| || || || || | |||||||||||| | Sbjct 1656780 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGG 1656839 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || | || || | ||| ||||| |||||| |||| || || || || Sbjct 1656840 ATC-TTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTT 1656898 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || |||||||| |||||||| ||| Sbjct 1656899 TCCAGTCAAGGTCTTCACAAAGATCTGCATTTTG 1656932 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || ||| |||||| || ||||| || || || ||||| || Sbjct 1656483 AGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGT 1656542 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || ||||| || || | |||||| ||||| || || | |||||| Sbjct 1656543 CCATCTTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATACCCTCC 1656602 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | ||| ||||| ||||||||||| || Sbjct 1656603 TTGTCCTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGT 1656661 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| || |||||||| Sbjct 1656662 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 >seq4042 Length=640736 Score = 98.7 bits (108), Expect = 6e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||||||| |||||||| | ||| |||||| ||||| || || || | Sbjct 502923 CGCCACCGCGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGG 502982 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | | || || |||| || || || || || || || || |||||||| || || || | Sbjct 502983 ACAAGGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGG 503042 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||||| |||| || | || ||| | || ||||| ||| Sbjct 503043 GGATTCCCTCCTTGTCTTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCA 503101 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || |||| || || || || ||||| | || |||||||| ||||||||| Sbjct 503102 ACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATG 503152 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||| | ||| |||||| || || || || || || | || || Sbjct 503162 AGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGT 503221 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || || || || |||||||| || || || || | ||||||| Sbjct 503222 CCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 503281 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | |||||| | || ||||| ||| || |||| || Sbjct 503282 TTGTCCTGGATC-TTGGCCTTAACGTTCTCGATGGTGTCGGAAGGCTCAACCTCCAAAGT 503340 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | || |||||||| ||||||||| Sbjct 503341 GATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCATG 503380 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||| | ||| |||||| || || || || || || | || || Sbjct 503618 AGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGT 503677 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || || || || |||||||| || || || || | ||||||| Sbjct 503678 CCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 503737 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| ||| ||||||| ||| Sbjct 503738 TTGTCCTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACTTCCAAGGT 503796 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || || || || ||||| ||||| ||||| ||| Sbjct 503797 GATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATATTG 503839 >seq4563 Length=5383265 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || || |||||| || ||||| || || || || || || Sbjct 1837964 AGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 1838023 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| || || || || | |||||| Sbjct 1838024 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 1838083 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | || || | || ||||| |||||| |||| ||| Sbjct 1838084 TTGTCTTGGAT-TTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGT 1838142 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || ||||| | |||||||| || || |||||| || Sbjct 1838143 GATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATGGTG 1838185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314710628296418