Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4681 188 6e-43 seq4563 140 3e-28 seq4475 140 3e-28 >seq4681 Length=7884553 Score = 188 bits (208), Expect = 6e-43 Identities = 215/289 (74%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533 |||||||| |||| |||| ||| || ||| || ||||| |||||||| ||| |||||| Sbjct 5741617 TGTGGAACTCGGCGCAACTGCAACTGGTGCGCGAGGGCAAGATGCACGGCTTTCTGCGCA 5741676 Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACG 135593 |||| ||||||||||| || | || ||| |||| | |||| ||||||||| | | | Sbjct 5741677 TGTACTGGGCAAAAAAAATTCTCGAGTGGACTGCCACTCCTGAAGAGGCGCTGGAGTATG 5741736 Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTT 135653 | ||||| | || ||| | ||||| | |||||||| || | || || || || || | Sbjct 5741737 CGATATTACTAAACGATAAGTACAGCCTCGATGGACGTGACCCTAACGGTTATGTTGGGT 5741796 Query 135654 GTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCA 135713 |||||||||||||| ||||||| ||||| || |||||||||||| | || || | Sbjct 5741797 GTATGTGGTCTATTGGCGGTGTGCACGACATGGGTTGGAAGGAGCGCCCTATTTTCGGAA 5741856 Query 135714 AGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAA 135762 || | || || ||||||||| | || ||| |||| ||| ||||||| Sbjct 5741857 AGGTCCGGTACATGAACTATCAGGGGTGTCGGCGAAAGTTTGATGTAAA 5741905 >seq4563 Length=5383265 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || ||||| || ||||||||| | || || | || ||||| || | Sbjct 1838183 CCATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTT 1838124 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | || |||| || || ||||| |||||||| || ||||| || || |||| Sbjct 1838123 CGGACACCATCGAGAATGTGAAGGCTAAAATCCAAGACAAGGAGGGCATTCCCCCAGATC 1838064 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| | || | ||||||||| || |||| || | || | ||||| |||| Sbjct 1838063 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACA 1838004 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||||||| | || ||||| | ||| |||| ||||| || Sbjct 1838003 ACATCCAGAAGGAGTCGACCCTTCACTTGGTGCTCCGTCTGCGTGGTGGTAT 1837952 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || |||||||| || ||||| || Sbjct 4507368 CATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCTTC 4507309 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | |||||| || ||||| ||||||||||| || || || ||||| Sbjct 4507308 GGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCA 4507249 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || ||||||| | ||| | || || || || Sbjct 4507248 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAA 4507189 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || ||||| || || || ||||| ||||| |||| ||||| Sbjct 4507188 TATTCAGAAAGAGTCCACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 4507141 >seq4475 Length=5362458 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || ||| | || ||||| || ||||| || || Sbjct 1656928 ATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACTCTGGAGGTGGAGCCTTCG 1656869 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || |||||||| || || || || || ||||| Sbjct 1656868 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCAGATCAG 1656809 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | ||||| | || |||||||||||||| Sbjct 1656808 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACTCTTTCCGATTACAAC 1656749 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || |||||| | |||||||| || || || Sbjct 1656748 ATCCAGAAGGAGTCCACTCTTCACTTGGTTCTCCGTTTGCGTGGAGGTAT 1656699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434891511169920