Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq3245 82.4 2e-11 >seq3245 Length=20949 Score = 82.4 bits (90), Expect = 2e-11 Identities = 135/191 (71%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 40044 CCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGAAGGTCCCGA 40103 ||||||| || || |||| || ||| |||||||| | | ||||| || | Sbjct 5758 CCAGCACACGCCCCACGTCACGCACCGCTGCGCGCGCCTGCAACTTTCCGAAAGTGATAA 5699 Query 40104 TCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTG-ACGTACCGGATGACCTCGCCGCGA 40162 |||| || || ||| | |||||| ||| ||| | || || || |||||| | | Sbjct 5698 TCTGCGCCACGCGGTCCGGCCCGTA-TTCCCGGCGCACATAGGCAATCACCTCGTC---A 5643 Query 40163 CGCCGGTCATC---GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGG 40219 |||||||| | ||| || || |||| ||| ||||||||||| || ||||||||||| Sbjct 5642 CGCCGGTCCTGACAGAAATCAATATCAAAGTCAGGCATGGACACACGTTCGGGGTTCAGA 5583 Query 40220 AACCGCTCGAA 40230 ||||||||||| Sbjct 5582 AACCGCTCGAA 5572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160396978730604