Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq4563 188 6e-43 >seq4563 Length=5383265 Score = 188 bits (208), Expect = 6e-43 Identities = 397/591 (67%), Gaps = 6/591 (1%) Strand=Plus/Plus Query 34259 GTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCC 34318 |||| ||||||||| || ||||| ||| ||| || || ||||| ||| | | Sbjct 3136900 GTGGCCGAGGAGCTACTCTGGTTTGTGGCGGGCAAGACAGACGCCAAGCTGCTGCAGGCG 3136959 Query 34319 CGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC 34378 | ||| | |||||||| | || | | | || || ||||||||| ||| | Sbjct 3136960 AAGAACGTGCATATCTGGGATGGGAACAGCACCAGGGAGTTCTTGGACAAGCTGGGTCAC 3137019 Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438 || || | | ||||||||||| ||||| ||||| ||||||||| | |||||||| Sbjct 3137020 ACAGAGCGAGCCGTTGGCGACTTGGGTCCGGTGTACGGATTCCAGTGGCGGCACTTTGGT 3137079 Query 34439 GCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTAC 34498 |||||||| || | |||||| || ||| | || |||| ||||| ||| | Sbjct 3137080 GCGGAGTACGGGAGCTGCGAAGACGATTATGCCGGCAAGGGCATCGACCAATTGCGTCAA 3137139 Query 34499 GTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAAC 34558 |||||||||||| | ||| |||||| ||||| | ||| | |||| |||||||| Sbjct 3137140 GTGATCGACACCATTAAGAATAACCCTTCGGACAGGCGTATCATTATGTCAGCGTGGAAT 3137199 Query 34559 CCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC 34618 || ||| | || |||||| || || ||||||||| ||| || ||||||||| Sbjct 3137200 CCATTGGACATTCCAAAGATGGCTCTTCCGCCGTGCCACTGCCTGGCGCAGTTCTACGTC 3137259 Query 34619 GC---GAATGG---GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTA 34672 | || | ||||| || ||||||||||| ||| | | |||||||| || Sbjct 3137260 TCACAGACCCGAAATGAGCTTTCGTGCCAGCTCTACCAAAGGAGCGCCGACATGGGCTTG 3137319 Query 34673 GGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG 34732 || ||||| |||||||| || ||||| || || || ||||||||||| ||||| | Sbjct 3137320 GGCGTGCCCTTCAACATCGCCTCCTACGCCCTCCTTACCTACATGATCGCCCATGTGACG 3137379 Query 34733 GGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792 || || || || || | ||||| || |||| || | || |||| |||||||| Sbjct 3137380 GGTCTGAAGCCGGGCGACTTTGTGCACACCATGGGCGACACACACGTCTATCTGAACCAT 3137439 Query 34793 ATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAG 34843 | |||| || | |||||| |||| || ||||| || ||| || Sbjct 3137440 GTAGAGCCCCTTAAGGAGCAGCTGGAACGTACACCACGACCCTTTCCCAAG 3137490 Score = 188 bits (208), Expect = 6e-43 Identities = 397/591 (67%), Gaps = 6/591 (1%) Strand=Plus/Minus Query 6502 CTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAG 6561 || ||| || ||||| || |||| |||||| | || |||| | |||||||| Sbjct 3137490 CTTGGGAAAGGGTCGTGGTGTACGTTCCAGCTGCTCCTTAAGGGGCTCTACATGGTTCAG 3137431 Query 6562 GTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATG 6621 |||| || | || |||| || ||||| | || || || || ||| ||||| Sbjct 3137430 ATAGACGTGTGTGTCGCCCATGGTGTGCACAAAGTCGCCCGGCTTCAGACCCGTCACATG 3137371 Query 6622 AGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCAT 6681 ||||||||||| || || || ||||| || |||||||| ||||| || || ||||| Sbjct 3137370 GGCGATCATGTAGGTAAGGAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAAGCCCAT 3137311 Query 6682 GTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCC---CCATTC---GCGACGTAGAA 6735 ||| | | ||| ||||||||||| || ||||| | || | ||||||||| Sbjct 3137310 GTCGGCGCTCCTTTGGTAGAGCTGGCACGAAAGCTCATTTCGGGTCTGTGAGACGTAGAA 3137251 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || ||| ||||||||| || || |||||| || | ||| || |||||||| Sbjct 3137250 CTGCGCCAGGCAGTGGCACGGCGGAAGAGCCATCTTTGGAATGTCCAATGGATTCCACGC 3137191 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAG 6855 |||| | ||| | ||||| |||||| ||| | |||||||||||| | ||| Sbjct 3137190 TGACATAATGATACGCCTGTCCGAAGGGTTATTCTTAATGGTGTCGATCACTTGACGCAA 3137131 Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTG 6915 ||||| |||| || | ||| || |||||| | || |||||||| |||||||| Sbjct 3137130 TTGGTCGATGCCCTTGCCGGCATAATCGTCTTCGCAGCTCCCGTACTCCGCACCAAAGTG 3137071 Query 6916 TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCG 6975 | ||||||||| ||||| ||||| ||||||||||| | | || || | ||| | Sbjct 3137070 CCGCCACTGGAATCCGTACACCGGACCCAAGTCGCCAACGGCTCGCTCTGTGTGACCCAG 3137011 Query 6976 CTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAG 7035 |||||||| || || | | | || | |||||||| | ||| | | | || Sbjct 3137010 CTTGTCCAAGAACTCCCTGGTGCTGTTCCCATCCCAGATATGCACGTTCTTCGCCTGCAG 3136951 Query 7036 CTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCAC 7086 | ||||| || || ||| ||| ||||| || ||||||||| |||| Sbjct 3136950 CAGCTTGGCGTCTGTCTTGCCCGCCACAAACCAGAGTAGCTCCTCGGCCAC 3136900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448234686177120