Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4563 86.0 5e-12 seq4475 86.0 5e-12 >seq4563 Length=5383265 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||| || || || || || |||| || || ||| | || || Sbjct 1837972 CACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 1838031 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || ||||||||||| || | ||| | || ||| ||||| Sbjct 1838032 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTG 1838091 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| || | || | | || || | |||||| |||| ||||| | || Sbjct 1838092 GATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTT 1838151 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || ||||| || ||||||||||| Sbjct 1838152 GCCGGTGAGGGTTTTCACGAAGATTTGCAT 1838181 >seq4475 Length=5362458 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| ||| || || || || || |||| ||||| ||| | || || Sbjct 1656491 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTC 1656550 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| | || | | ||| |||||| Sbjct 1656551 GAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATACCCTCCTTGTCCTG 1656610 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || | || | | || ||| | |||||| |||| ||||| | || Sbjct 1656611 GATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTT 1656670 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| ||||| Sbjct 1656671 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | || || | ||||| || || ||| ||| || || || || ||||||| | Sbjct 1656702 CCTCCACGCAAACGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 1656761 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| || || || ||||||||||| || | || Sbjct 1656762 AGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGG 1656821 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| ||||| ||| || || | || | | || || | |||||| Sbjct 1656822 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCACC 1656881 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||| ||||| | ||||| |||| || || |||||||| ||||| || Sbjct 1656882 TCCAGAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1656931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429519707259698