Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4475 149 1e-30 seq4563 143 6e-29 seq4042 132 1e-25 seq2797 132 1e-25 seq2556 100 7e-16 seq1655 89.7 1e-12 >seq4475 Length=5362458 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| |||||||| || || |||| |||||||||| | ||| | |||||| Sbjct 1656717 AGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCT 1656776 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || || ||||| ||||||||| Sbjct 1656777 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCT 1656836 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || |||||||| || | ||||| || | ||||| ||| Sbjct 1656837 TGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTC 1656896 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || ||||| || || | || | |||||||| Sbjct 1656897 TTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1656931 >seq4563 Length=5383265 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| ||||| |||| || ||| | ||||| Sbjct 1837970 AGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCC 1838029 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || ||||||||| Sbjct 1838030 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCT 1838089 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||| ||||||||||| || | ||||| || || ||||| ||| Sbjct 1838090 TGGATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTC 1838149 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||||| | ||| | |||||| Sbjct 1838150 TTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 1838181 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| | |||||| ||||| || | ||| || || | | || Sbjct 4507146 ACGCAGACGCAGCACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAGAGGGT 4507205 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || || || || || || ||||| || Sbjct 4507206 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 4507265 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| || ||||| || ||| |||||| || || || | ||| || || | Sbjct 4507266 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAG 4507325 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 ||||| ||||||||||| | || || | ||| | ||||| || || Sbjct 4507326 AGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATGTTGTG 4507373 >seq4042 Length=640736 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| || || || |||| |||||| |||| ||| || | || || || |||||||| || Sbjct 503638 AGTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGTCCGTCCTCCAGCTGCTTTCC 503697 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||||||| | || || || || || || || || |||||||| |||||||| ||| Sbjct 503698 AGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTT 503757 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || ||||||||||| || | || || || || ||||| |||||||| |||||||| Sbjct 503758 GACGTTCTCGATGGTGTCGGAAGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTCAAAGT 503817 Query 225696 TTTTATGAACACTTGCATTTT 225716 || | ||| | |||||| || Sbjct 503818 CTTCACGAAAATTTGCATATT 503838 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| | || | ||| || || || || | |||||| |||| ||| || Sbjct 502931 CGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGACAAGGTA 502990 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| | || || || || || || || || Sbjct 502991 CGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCC 503050 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| || ||||||||||| || | || || || || Sbjct 503051 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACCTCCAAA 503110 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 503111 GTGATGGTCTTGCCGGT 503127 Score = 116 bits (128), Expect = 9e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||| || |||| |||||| |||| ||| || | || || || |||||||| || Sbjct 503410 AGTAGATTCCTTCTGGATATTGTAGTCGGACAAGGTACGTCCGTCCTCCAGCTGCTTTCC 503469 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||||||| | || || || || || || || || |||||||| |||||||| ||| Sbjct 503470 AGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTT 503529 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||||||||| || | || || || || ||||| |||||||| || Sbjct 503530 GACGTTCTCGATGGTGTCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCGGT 503583 Score = 111 bits (122), Expect = 4e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| || || || |||| |||||| |||| ||| || | || || || |||||||| || Sbjct 503182 AGTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGTCCGTCCTCCAGCTGCTTTCC 503241 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||||||| | || || || || || || || || |||||||| |||||||| ||| Sbjct 503242 AGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTT 503301 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||||||||| || | || || || || ||||| |||||||| || Sbjct 503302 AACGTTCTCGATGGTGTCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCGGT 503355 >seq2797 Length=19742 Score = 132 bits (146), Expect = 1e-25 Identities = 136/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 7542 TGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTT 7601 |||| || |||| |||| || || ||| |||| |||||||| ||| |||| ||||| || Sbjct 7083 TGGTGATGACCAAATTTATAATGTAATTGTTACTGCGCATGCTTTTATTATAATTTTTTT 7024 Query 7602 TTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGG 7661 | | ||||| || |||| || || || || ||||||||||| || |||||||| | || Sbjct 7023 TATAGTTATACCTATTATAATTGGTGGATTTGGAAATTGATTAGTACCTTTAATATTAGG 6964 Query 7662 TGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 ||||||||||| || || ||| | | | |||||||| ||||||| || ||| ||| Sbjct 6963 AGCTCCTGATATAGCATTCCCACGAATACATAATATAAGATTTTGATAACAACCTCCT 6906 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| || |||||||||||||| |||||||||||||| | ||||| || || || | Sbjct 6547 ATACTTCTGGGTGACCAAAAAATCAAAATAAATGTTGATATAAAATAGGGTCCCCACCAC 6606 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | | ||| ||||| || ||||| ||||||| ||| ||||| Sbjct 6607 CAGCTGGGTCAAAGAAAGACGTATTTAAATTTCGATCTGTTAA 6649 >seq2556 Length=3215 Score = 100 bits (110), Expect = 7e-16 Identities = 86/104 (83%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||||||||||||||| ||||||||||| || | ||||| || || || | Sbjct 3054 ATACTTCTGGATGACCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCTCCACCAC 3113 Query 370728 CTGATGGATCAAA-AAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | | ||||||||| |||| | ||||| ||||||||||| ||||| Sbjct 3114 CAGCTGGATCAAAGAAAGAT-GTATTTAAATTTCTATCTGTTAA 3156 >seq1655 Length=5713 Score = 89.7 bits (98), Expect = 1e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683 |||| ||||| || |||||||||||||||| |||||||||||| ||| || |||| || Sbjct 3379 GGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGTCGT 3320 Query 372684 AAAACGATGTATAGGGTCTGAC 372705 || |||| |||||||| ||||| Sbjct 3319 AAGACGACGTATAGGGCCTGAC 3298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192455628552524