Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4563 563 1e-155 seq4471 199 5e-46 >seq4563 Length=5383265 Score = 563 bits (624), Expect = 1e-155 Identities = 1258/1875 (67%), Gaps = 14/1875 (1%) Strand=Plus/Minus Query 76770 TTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829 ||||| |||| || |||||||| | | | || || ||||| || ||||| ||||| Sbjct 4594974 TTCTTGTCCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTCCGCAGATAATACATT 4594915 Query 76830 CCAGTTTTTAGACCCAGACT-CCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 || ||||| || ||||| | ||| ||| || || ||| |||||||| ||| | Sbjct 4594914 CCGGTTTTGAG-CCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTCAGTTTTCCATAGTT 4594856 Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948 || || |||| ||| ||||| | |||||||| ||||| || || || || | |||||| Sbjct 4594855 TGGCTCTGCTACATGTATATTAAAGGACTGACTCTGATCTATAAACGCACCACGATCAGC 4594796 Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 |||||||| || ||| ||| || |||||||||| |||||| ||| | | Sbjct 4594795 GGCCATTTTAATTGTGGACTTCACAGAGATTTCCCAAACGGTTTTGTAAAGGTCACGAAC 4594736 Query 77009 ATCATCTGGAAG-GTTTG--TATTTTGAATGGAACCACCATCTG-ATATAATTGTATTCT 77064 | | ||||| || | |||||||||| ||||| || ||| | || ||| |||| Sbjct 4594735 CTTCTGTGGAATAGTCTCAATATTTTGAATTGAACC-CCTGCTGGAAATGATTTGGTTCT 4594677 Query 77065 TTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTA 77124 | || ||||| | |||||| | | ||| || || | || | | |||| | ||||| | Sbjct 4594676 TCATGTCATCGTCCCACAAGTCCAGCTCAGTCAAGTCCCTCAACAAATGATGGTTAACCA 4594617 Query 77125 TTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAG 77184 || ||||| ||||||| ||||| | || ||||||||| | ||||| || || | || Sbjct 4594616 CCTGGAATTCGCCAGACAGAACTCTTCTGGTATAAATATTAGTAGTATACGGCTCGAAAG 4594557 Query 77185 ATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAAC 77244 |||| ||||| |||| ||| ||||||||||| || ||||||||||| || |||| | Sbjct 4594556 ATTCGTTGTTGCCCATAATCTGAGCAGTAGATGCTGTTGGCATAGGAGCAACCAGCAGGG 4594497 Query 77245 TATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304 || | || ||| || | | || || ||||| | || ||| ||||| || | | Sbjct 4594496 AGTTCCGGACACCGTGCTTCTTTATCGACTCCTTTAGCTTTTGCCAGTCCCAGAGGTTCG 4594437 Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTAT 77364 || || ||||| | ||||| || | |||||| || || | ||| | || Sbjct 4594436 TCGGAACTTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTTACCGGGCTTCCCTCAT 4594377 Query 77365 ATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAAT 77424 | ||||| || || ||||| | | ||||| ||||||||| |||||||| || || || | Sbjct 4594376 AAGTTTCGTATGGGCCTTCGATCTGAGCTAATTCACAACTGGCTTCCAAAGCCCCATAGT 4594317 Query 77425 AAATTGTTTCGAAAATCTTCTTATTGA-GATCTTGTGCTTCAATACTATCAAACGGATAA 77483 |||| |||||||| |||| || ||| | || | |||||| ||| ||| | || | Sbjct 4594316 AAATCGTTTCGAATATCTGCTGATTCAAGAGGCTC-GCTTCATCACTTTCATATGGGAAT 4594258 Query 77484 TGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTC 77543 | | ||||| || ||||| || || ||||||||||| || || | || | ||| ||| Sbjct 4594257 CGCATGAGAATTAATGCATCAGCAAAGCCCTGAACTCCGATGCCCACGGGGCGATGCCTC 4594198 Query 77544 TTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGA 77603 |||||| | | || ||||| | |||||| | || || || || || || |||||| Sbjct 4594197 AAATTGGACTTCCTTGCCTCTGGCAGCGGATAAAAGTTGATATCGATTATCTTGTTGAGA 4594138 Query 77604 TTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATC---T 77660 ||||| ||| || || ||||||||||| ||||| || | || | Sbjct 4594137 TTTCTGGTAACCGTCTTGGTGACTTCCTTTAGTTTTTTGAAATCGTATGTCTTTTCCGGT 4594078 Query 77661 ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTG 77720 | ||||||||||| | ||| || ||||| | ||||||||||| | ||||| | | | Sbjct 4594077 GTGACAAACATGTTAAGAGCAATGGATGCCAAGTTACAAACTGCAATCTCATCCGGGGAG 4594018 Query 77721 GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGG 77780 | || | | || || || || | ||||| ||||| || ||||| | ||| || ||| Sbjct 4594017 GAGTACTCGACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCAACATTCTGCTGG 4593958 Query 77781 TTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGT 77840 || ||||| | ||||| | ||||| | || ||| ||||| | || ||||| | ||| Sbjct 4593957 TTACTCTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGATTTCCAGTTTCCACTTGT 4593898 Query 77841 GATTCGATAATAGATTTCCAGACGACTCTAGCTTTTA-TCATAGATTTGTATCGCCTCTC 77899 | ||| ||||| | ||| | | | ||| || | | | | || | | ||| ||| Sbjct 4593897 GCTTCAATAATGGCGAACCATAAGGATTGAGCCTTAACTGTTCGGTTGGCACGGCC-CTC 4593839 Query 77900 TCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGG 77959 | ||||||| ||||| | |||||||||||| ||||| ||||| | | ||||| Sbjct 4593838 TTGCTCATATTTCACATATAACTTTTCAAATTCATCGCCCCATACATCGTGAAGGCCAGG 4593779 Query 77960 GCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAG 78019 ||||| | |||||||| | ||||| || |||| ||| || |||||||| || || Sbjct 4593778 GCATTTGTGCGGGCACATAAGGGACCAATCTCCATTGGCCTCTACACGTTTCATGAAAAG 4593719 Query 78020 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATT 78079 |||||||||||| | || ||| |||||||||| | || ||||| || || || || Sbjct 4593718 ATCAGGTATCCACAAGGCGTAAAAAAGATCTCGGGCGCGATTCTCTTCCTTGCCAGTGTT 4593659 Query 78080 CTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCAT 78139 || || || || ||||| || | | |||||| ||||| || || || || || || | Sbjct 4593658 TTTCTTGAGTTCCAGAAATTCAAAGACATCAGAGTGCCAGGGCTCCAGGTAAATAGCAAA 4593599 Query 78140 AACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCT 78199 |||| || || || ||||||||||| | ||| | || |||||| | || || Sbjct 4593598 GGCTCCTGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCAACGTTATTGAAGACCCT 4593539 Query 78200 CAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC 78259 || ||| |||| | || || || |||||||||||||| | || || | || |||| Sbjct 4593538 CAGCATGGGAACCAGTCCATTGGAAGTTCCATTTGTTCCGCATATCGAAGTACCCTTTGC 4593479 Query 78260 GCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACG 78319 || ||| | || || || || || || || ||||| || | || || | Sbjct 4593478 TCGGATACAATGAACATTTAGTCCAATGCCACCAGCAGATTTAGAAATCATGGCACATTG 4593419 Query 78320 TTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 | || | | | || || || || ||| | ||||| | | ||| ||||| Sbjct 4593418 CTCCACAGACTTAAAAATGCCTTCGATGGAGTCGGCTGTCATGGTTAAAAGGAAACATGA 4593359 Query 78380 AGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCA 78439 ||| | || | || || |||| ||| | || || |||||||| || || | Sbjct 4593358 AGATAGCTGCGGCCGATTTGTGGCTGCTGCAAAAAGCGTTGGTGATGCATGAGTGAAGTA 4593299 Query 78440 TTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCC 78499 || || | ||||| || ||||| | || | || || || || ||||| Sbjct 4593298 CCGCTCTGACAAAAGATTATACGTTTCTACGGCCGCGTCGATATCTTCCCCGTGGATTCC 4593239 Query 78500 TACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAA 78559 | ||| || |||||||||||||| || || | |||| | ||||| ||| | || || Sbjct 4593238 GATCGCAACGCGCATCAACATATGTTGCGGCCGTTCAGCGATCTTACCGTTTCTCTTTAA 4593179 Query 78560 CAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTA 78619 ||| || || ||| | |||||||| || ||||| || || |||||| | ||||| Sbjct 4593178 CAAATAAGAACGTTCGAGGGTTTTAAACCCGAAATAATTATACCCAAAGTCGCGATCGTA 4593119 Query 78620 AATAATAACAGAATT 78634 || ||| ||||| Sbjct 4593118 GATTATAGATGAATT 4593104 >seq4471 Length=3711889 Score = 199 bits (220), Expect = 5e-46 Identities = 550/837 (66%), Gaps = 11/837 (1%) Strand=Plus/Minus Query 47841 ACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 47900 |||||||| || || || ||||| |||||||| || || || || || |||| Sbjct 604347 ACTCCCATACGCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTTCCGTCCAGC 604288 Query 47901 GATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAAT 47960 || || | ||||| |||| || || || | || || || ||| || || | Sbjct 604287 GAGATCATCTCCATGAAATTGAAAGGGTTCTTGGTGTTGTAGATCTTTCCAACACCAAGC 604228 Query 47961 TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATT 48020 || | || | ||||| || || || || || ||||| || |||||||| Sbjct 604227 TCCACCAGCAAACGGTCTGCGACAAACTCGATGTACTGGGACATCAGGTCGCAATTCATG 604168 Query 48021 CCTAT-AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATC 48079 || || ||||||| | || || || || ||||| ||||| || || || | || || || Sbjct 604167 CCGATCAAGTTTA-CGGGAAGGGCATCTGTAAGGAACTCCTGCTCAATGGCCACCGCGTC 604109 Query 48080 CACTATTATC--GATGTTACCGTTTC-CTCACTTGGTGGATACAACAAATGTTTAAACAT 48136 || ||| |||| | | | || || ||||| | | || | || | ||||| Sbjct 604108 GCGGATAATCTCGATGATGCGCTCTCGCT---TTGGTCGCTGCACGAGGTGCTGGAACAT 604052 Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 || ||||| || || || | ||||| || | || | |||||| || ||||| Sbjct 604051 CAAGACGGCAAAGTCGCAGTGCAAGCCTTCGTCCCGGGATATAAGTTCGTTGGAGAATGT 603992 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256 || || ||||| || |||||||| || ||||| || || | ||||| || ||| Sbjct 603991 CAGGCCCGGCATCAGGCCACGTTTCTTTAGCCAGAAAATAGAGGCGAAGCTGCCGCTAAA 603932 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTG 48316 ||| ||||| |||||||| ||||| ||| ||| || |||||| || ||||| ||| Sbjct 603931 GAAGATGCCCTCTACGGCGGCAAAGGCGATAATTCGCTCTCCAAAATTGGCTGACTTGGA 603872 Query 48317 T---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 | ||||| | ||||| || ||||| ||||||| ||||| || || || || Sbjct 603871 TGAGATCCAGGAAAGCGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATCGTCTCGATGGC 603812 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||| || || | | | || |||| | ||| || || || | | |||||| Sbjct 603811 ATTGAACAGGTACTCCCGCTGATGCGGATCTCGGATGTATGTGTCGATCAGGACACTATA 603752 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 |||||||||||| | ||||| ||||| ||||| || ||||| || || | || || || Sbjct 603751 CATTTCGGAGTGCACGTTTTCCATTGCGATCTGGAAACCGTAGAAGCAGCGTGCCTCAGT 603692 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 |||||| |||||| | |||||| ||| ||| ||||| || || |||||||| ||| Sbjct 603691 GATCTGAACCTCCTGGCTAAATCGCTCAACCAGGTTCTCGTTCACGATTCCATCGGAAGC 603632 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 ||||| || || | || ||| || || | |||| | | || || ||| Sbjct 603631 GGCAAAGAAGGCCAGCACGTGTGAGATGAAGTGACGCTCGTCGTCCTTTAGGCGATGCCA 603572 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||| | | ||| || || | ||| ||||| || | ||||| || || ||||| || Sbjct 603571 GTCCGTCAGATCCTTGGACAGATCCACTTCCTCCACAGTCCAGAAGGAAGCCTCAGC 603515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694625852101440