Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq3245 98.7 3e-16 >seq3245 Length=20949 Score = 98.7 bits (108), Expect = 3e-16 Identities = 241/359 (67%), Gaps = 15/359 (4%) Strand=Plus/Minus Query 40036 CCAGCACGCGCGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGACCGAAGGTCCCGA 40095 ||||||| ||| || |||| || ||| |||||||| | | ||||| || | Sbjct 5758 CCAGCACACGCCCCACGTCACGCACCGCTGCGCGCGCCTGCAACTTTCCGAAAGTGATAA 5699 Query 40096 TCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTG-ACGTACCTGATCACGTCGCCCCGT 40154 |||| || || ||||| |||||| ||| ||| | || || ||||| ||| | || Sbjct 5698 TCTGCGCCACGCGGTCCGGCCCGTA-TTCCCGGCGCACATAGGCAATCACCTCGTCACGC 5640 Query 40155 CG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGA 40212 || || | || ||| || || |||| ||| ||||||||||| || ||||||||||| | Sbjct 5639 CGGTCCTGACA--GAAATCAATATCAAAGTCAGGCATGGACACACGTTCGGGGTTCAGAA 5582 Query 40213 ACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAG---- 40268 |||||||||| | || | || || ||||| | || || || || ||| Sbjct 5581 ACCGCTCGAACAGCAGGTTGAAGGGAATAGGGTCAATATCCGTAAT----AGTCAGCGCC 5526 Query 40269 TAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCC 40328 | || |||| || || ||| |||| ||||| || || || ||| | | | | | Sbjct 5525 CATGCCGCCAGAGAGCCTGCACCCGACCCACGGCCCGGCCCCACCGGGATATCATGCGCT 5466 Query 40329 TTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCA-GCTGGA 40386 || |||| ||| ||||| || |||| || |||||| ||||| |||| |||||| Sbjct 5465 TTCCCCCACTGGATAAAGTCCGCCACGATCATGAAGTAACCGGGGAAGCCCATGCTGGA 5407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160131394330288