Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4475 134 3e-26 seq4563 114 3e-20 seq4042 104 5e-17 >seq4475 Length=5362458 Score = 134 bits (148), Expect = 3e-26 Identities = 157/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| || |||||||||||||||| | ||| | |||||||| | Sbjct 1656722 CAAG-TGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCGA 1656780 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | |||||| || | | ||| || ||||| ||||| | Sbjct 1656781 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGGA 1656840 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| ||| ||| || || ||||| || || || | Sbjct 1656841 TCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTTTC 1656900 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | |||||||| |||| ||||||||| Sbjct 1656901 CAGTCAAGGTCTTCACAAAGATCTGCATTTT 1656931 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||| || ||||| || ||||||||||| |||| | || | Sbjct 1656482 GAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCG 1656541 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| ||||||||||| || | ||||||||| | | ||| || Sbjct 1656542 TCCATCTTCGAGCTGCTTT--CCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATACCC 1656599 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || ||| |||| | | |||| || ||| ||||| ||| Sbjct 1656600 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGA 1656659 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || ||||||||||||| |||||| Sbjct 1656660 GTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 >seq4563 Length=5383265 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| || ||||||||||| |||| | ||| | ||||| || | Sbjct 1837975 CAAG-TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCA 1838033 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | |||||| || | | || || ||||| ||||| | Sbjct 1838034 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGA 1838093 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| |||| | | |||| ||| ||| || || | || || || |||| Sbjct 1838094 TTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGC 1838153 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || |||||||||| ||||| Sbjct 1838154 CGGTGAGGGTTTTCACGAAGATTTGCAT 1838181 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| |||||||| || || || || || | | || | |||||||| | Sbjct 4507161 CAAG-TGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAGAGGGTGCGGCCATCTTCCA 4507219 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | |||||| || | | |||||||| || || |||| Sbjct 4507220 GCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAA 4507279 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||||| | || | | || ||| || || |||||||| || || |||| Sbjct 4507280 TCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTGC 4507339 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||||| ||||| ||||||| |||||| || Sbjct 4507340 CCGTGAGGGTCTTAACGAAGATCTGCATGTT 4507370 >seq4042 Length=640736 Score = 104 bits (114), Expect = 5e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | ||||||||| || ||||| ||||| |||| || || | || || Sbjct 503623 GAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGTCCGTC 503682 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || |||||||| | | |||||| || | | |||||| ||||| Sbjct 503683 CTCCAGCTGCTTT--CCAGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTG 503740 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || ||||| |||| | | |||| ||| ||| ||||| | || || Sbjct 503741 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGGCTCAACTTCCAAGGTGATG 503800 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || | |||||||||||| | ||||| || Sbjct 503801 GTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATATT 503838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153747681654766