Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4475 158 9e-34 seq4563 147 2e-30 seq4042 134 1e-26 >seq4475 Length=5362458 Score = 158 bits (174), Expect = 9e-34 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| ||| |||||| ||||||||||| |||| ||| ||| | || || Sbjct 1656491 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTC 1656550 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||| ||||||||| |||| ||| | ||| ||||| ||| Sbjct 1656551 GAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATACCCTCCTTGTCCTG 1656610 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | |||||||||| | ||||| |||| || || ||||| Sbjct 1656611 GATCTTGGCCTTCACATTCTCAATGGTGTCGGATGGCTCCACTTCCAGAGTGATGGTCTT 1656670 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||||||||| ||||| Sbjct 1656671 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 1656700 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| |||||||||||||||| || ||| | || || Sbjct 1656720 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCG 1656779 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||||| |||||||||||||| ||| | ||| ||||| || Sbjct 1656780 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGG 1656839 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | |||||||| | | |||||||||| || || |||||| Sbjct 1656840 ATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTTT 1656899 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||||||| ||||| ||||| Sbjct 1656900 CCAGTCAAGGTCTTCACAAAGATCTGCAT 1656928 >seq4563 Length=5383265 Score = 147 bits (162), Expect = 2e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| || |||||| ||||||||||| |||| || ||| | || || Sbjct 1837972 CACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 1838031 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| |||||||||||||| || | || ||||| || Sbjct 1838032 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTG 1838091 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||||| | | |||||||| | | |||||||||| || || ||||| Sbjct 1838092 GATTTTAGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTT 1838151 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || |||||||| |||||||||||||||||| || Sbjct 1838152 GCCGGTGAGGGTTTTCACGAAGATTTGCATGGTG 1838185 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||| ||| | ||| ||| || || || || || || | | Sbjct 4507141 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAG 4507200 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || || ||||||| |||||||||||||| ||| Sbjct 4507201 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 4507260 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||||| || ||| ||||| || | || | || || || | | ||| ||| Sbjct 4507261 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACC 4507320 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTG 44343 || | || || ||||| |||||||||||||| |||||||| |||||| |||| Sbjct 4507321 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATGTTGTG 4507373 >seq4042 Length=640736 Score = 134 bits (148), Expect = 1e-26 Identities = 150/195 (77%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 |||||| ||||| ||||| |||| | || | || |||| ||||||||||| || || | Sbjct 503188 CTCCTTCTGGATATTGTAGTCGGACAAGGTA-CGTCCGTCCTCCAGCTGCTTTCCAGCGA 503246 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 ||||||||||||||||||||| || | || ||||| ||| ||||| || | || | Sbjct 503247 AGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT-GGCCTTAACG 503305 Query 44265 TTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 ||| | |||||||||| | || ||||||| || || ||||| || || ||||||||| Sbjct 503306 TTCTCGATGGTGTCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTAAGGGTCTTC 503365 Query 44324 ACGAAGATTTGCATG 44338 || ||||| |||||| Sbjct 503366 ACAAAGATCTGCATG 503380 Score = 132 bits (146), Expect = 3e-26 Identities = 149/194 (77%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||| ||||| ||||| |||| | || | || |||| ||||||||||| || || || Sbjct 503417 TCCTTCTGGATATTGTAGTCGGACAAGGTA-CGTCCGTCCTCCAGCTGCTTTCCAGCGAA 503475 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||||||||||||||||| || | || ||||| ||| ||||| || | | || Sbjct 503476 GATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT-GGCCTTGACGT 503534 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | |||||||||| | || ||||||| || || ||||| || ||||||||||||| Sbjct 503535 TCTCGATGGTGTCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTCA 503594 Query 44325 CGAAGATTTGCATG 44338 | ||||| |||||| Sbjct 503595 CAAAGATCTGCATG 503608 Score = 125 bits (138), Expect = 5e-24 Identities = 148/195 (76%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 |||||| || || ||||| |||| | || | || |||| ||||||||||| || || | Sbjct 502960 CTCCTTCTGAATATTGTAGTCGGACAAGGTA-CGTCCGTCCTCCAGCTGCTTTCCAGCGA 503018 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 ||||||||||||||||||||| || | || ||||| || ||||| || | | | Sbjct 503019 AGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGGATCTT-GGCCTTGACG 503077 Query 44265 TTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 ||| | |||||||||| | || ||||||| || || ||||| || |||||||||||| Sbjct 503078 TTCTCGATGGTGTCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTC 503137 Query 44324 ACGAAGATTTGCATG 44338 || ||||| |||||| Sbjct 503138 ACAAAGATCTGCATG 503152 Score = 120 bits (132), Expect = 2e-22 Identities = 146/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 |||||| ||||| ||||| |||| | || | || |||| ||||||||||| || || | Sbjct 503644 CTCCTTCTGGATATTGTAGTCGGACAAGGTA-CGTCCGTCCTCCAGCTGCTTTCCAGCGA 503702 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 ||||||||||||||||||||| || | || ||||| ||| ||||| || | | | Sbjct 503703 AGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT-GGCCTTGACG 503761 Query 44265 TTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 ||| | |||||||||| | || || |||| || || ||||| || || | |||||| Sbjct 503762 TTCTCGATGGTGTCGGAAGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTC 503821 Query 44324 ACGAAGATTTGCAT 44337 ||||| |||||||| Sbjct 503822 ACGAAAATTTGCAT 503835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359968700003682