Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5351 168 7e-37 seq4758 86.0 6e-12 >seq5351 Length=991022 Score = 168 bits (186), Expect = 7e-37 Identities = 484/736 (66%), Gaps = 10/736 (1%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| | ||||| |||| ||| || ||||||||||| || ||||| || || Sbjct 257258 ACTCCCATGCGCTGGTATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGC 257317 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCA 16781 || || |||||||||| | ||| || || | | || | || ||| | |||| Sbjct 257318 GAAATCATCTCCATGAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACG--CCCA 257375 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 || | | || | || || || || || ||||| || |||| | ||||| |||| Sbjct 257376 ACTCCACCAGCAAACGGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCA 257435 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || ||||| || || || || || || | || ||||| || | ||||| | Sbjct 257436 TGCCGATAAGGTTCACTGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCAT 257495 Query 16902 CCTTAATAATACTAGCAACTCGTTCCTCGGACGG-TGTATGTTTAAGATGTTTAAACATC 16960 | ||| || | | || || ||| || | || ||| || | |||||| Sbjct 257496 CGCGAATGATTTCAATGATGCGCTC-TCGCTTGGGTCGCTGCACAAGGTGCTGGAACATC 257554 Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || ||||||||||||||| | |||||||| || ||| || ||||| || || ||| Sbjct 257555 AGCACTGCGAAATCGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGTC 257614 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| ||||| ||||| | ||| || || | |||||| || ||| Sbjct 257615 AGTCCCGGCATCAGGCCTCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAG 257674 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTTTGTT 17139 || || || || |||| ||||| ||||| | || || || | | || | ||| | Sbjct 257675 AAGATGCCTTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAGTTGGCTGACTTGG-- 257732 Query 17140 ACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 | || ||||| | |||| || || || |||| | ||||||||| |||| Sbjct 257733 AGGAGATCCAGGACATGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTTTCGATGG 257792 Query 17199 CCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 | || || | | |||| | || | ||| || || || ||||| || | |||| Sbjct 257793 CGTTGAACAGGTACTCTCGCTGGTGCGGATCGCGGATGTATGTGTCGATCAGCACACTGT 257852 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 |||| || ||||| | |||||||||||| ||||| || ||||| ||||| ||||| || | Sbjct 257853 ACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTG 257912 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 || || || ||| | ||| || ||| | ||||| || || || ||||| ||| | Sbjct 257913 TGATCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTGACAATGCCATCGGAGG 257972 Query 17379 CGGCGAAAAACGCCAA 17394 | ||||| || ||||| Sbjct 257973 CTGCGAAGAAGGCCAA 257988 >seq4758 Length=893088 Score = 86.0 bits (94), Expect = 6e-12 Identities = 190/271 (70%), Gaps = 12/271 (4%) Strand=Plus/Plus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGA-GCC- 119840 |||||| | || | ||| ||||| | | || |||||||| | |||| || | ||| Sbjct 498532 TTCATAAACCGAACCTTACCGAAGATAGCCCGCTCCTTCCAGCCCATGTCATGAATGCCT 498591 Query 119841 CCGCTACGGCC-CATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTA 119898 ||| | || || |||| |||||||| || |||||||| || || || | ||| ||| Sbjct 498592 CCGAT-CGACCACATA--CATCCCACATAACCGTTGGGGTCTCGACCGTCGAGACT-GTA 498647 Query 119899 TTTATCGTTTAAGTAG-ATACAG-ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCC 119956 || ||||| ||| || || | || | | ||| ||| ||||| | ||||||| Sbjct 498648 CTTGTCGTT-AAGCAGGATCGCGTACTCC-AGCGCTTGTTCCGGAGTGGCAGTCCATTCA 498705 Query 119957 AGTAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATT 120016 || || ||||| |||||||||||||| | | | || |||||||| || || || |||| Sbjct 498706 AGGATCTTTTTGGCCCAGTACATACGGAGGAAGCCGTGCATTTTTCCCTCGCGTACCAAC 498765 Query 120017 TGAAGTTGTGCGGCGTTCCATAAGGGATCGT 120047 || | || |||| |||||| | | ||||| Sbjct 498766 TGCAACTGCGCGGAGTTCCACAGGTCATCGT 498796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517508375532720