Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4758 105 7e-18 >seq4758 Length=893088 Score = 105 bits (116), Expect = 7e-18 Identities = 171/238 (72%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 118966 CGCTCCTTCCATGCTCTGTCGTGGAGTCCTGCTACTGCCCATAGACATCCCACGTATCCG 119025 ||||||||||| | |||| || | ||| | | | ||| | ||||||||| || ||| Sbjct 498562 CGCTCCTTCCAGCCCATGTCATGAATGCCTCCGATCGACCACATACATCCCACATAACCG 498621 Query 119026 TTGGGATCTGTTCCGTCTA-ACTCGTACTTATCGTTTAAGTAG-ATACAG-ACGCTTAAC 119082 ||||| ||| ||||| | ||| |||||| ||||| ||| || || | || | | | Sbjct 498622 TTGGGGTCTCGACCGTCGAGACT-GTACTTGTCGTT-AAGCAGGATCGCGTACTCC-AGC 498678 Query 119083 GCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACATACGTAAATAC 119142 || ||||||||| | ||||||| || || ||||| |||||||||||||| | | Sbjct 498679 GCTTGTTCCGGAGTGGCAGTCCATTCAAGGATCTTTTTGGCCCAGTACATACGGAGGAAG 498738 Query 119143 CCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAGAGGATCGT 119200 ||||||||||| |||||| | || ||| | || |||| |||||| || ||||| Sbjct 498739 CCGTGCATTTTTCCCTCGCGTACCAACTGCAACTGCGCGGAGTTCCACAGGTCATCGT 498796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511377616519280