Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5380 399 3e-106 seq5351 136 5e-27 >seq5380 Length=870010 Score = 399 bits (442), Expect = 3e-106 Identities = 1221/1879 (65%), Gaps = 20/1879 (1%) Strand=Plus/Plus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 |||||||| ||||| ||||||| | ||| || || || || |||||||||||||| Sbjct 557585 CTTGTCCACGGTGAACTGAATGGCGTTTGCTGCCGGCTTTGTGCGCAGATAGTACATTCC 557644 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 ||||| || || |||| |||||| || || || || || || | || Sbjct 557645 GGTTTTAAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTAAGCTTTCCGTAGTTTGG 557704 Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977 ||||| | ||| || || | || || |||||||||||||| || || | || || || Sbjct 557705 CTCTGCCACATGAATGTTGAAGGACTGGCTTTGATCGATGAAAGCACCTCGATCAGCGGC 557764 Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 53036 |||||| || | | ||| | |||||||| | ||||| |||| || | | | Sbjct 557765 CATTTTAATAGTAGACTTCACAGAGATTTCCCACACGGTTTTGTAAAGATCTCGGACCTT 557824 Query 53037 CTTCTGGAAGGTTTGTAT--TCTGAATAGATCCACCATCTACCA-TAATCCTATTCTTGA 53093 || | ||| || || || | ||||| || || || || | | || ||||| | Sbjct 557825 CTGCGGGATGGCTTCGATGTTTTGAATGGAGCC-CCTGCTGGAAATTATTTGGTTCTTCA 557883 Query 53094 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 53153 | ||||| | ||| || | || || | | || | | || | || || |||| Sbjct 557884 TATCATCGTCCCACAAGTCCAATTCAGTCAGGTCCCTCAACAAGTGATGGTTGACCACTT 557943 Query 53154 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 53213 ||||||| || |||| |||| | ||||||||||||| | |||||||| || | ||| | Sbjct 557944 GAAATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGTCGTATACGGCTCGAAAGATT 558003 Query 53214 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 53273 | || || |||| ||| || ||||| |||||||| |||||||| ||||| | | | Sbjct 558004 CGTTGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCATAGGAGCCACAAGCAGGGAGT 558063 Query 53274 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACG 53333 | || | ||||| | |||| || || || | ||| | ||| || | || | Sbjct 558064 TCCTGACACCGTGCTTCTTGATCGACTCCTTCAGTTTCTGCCAGTCCCACAGGTTCGTTG 558123 Query 53334 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATG 53393 | || |||||||| ||||| || ||| |||| | Sbjct 558124 GCGTTTTGTCCCACATGTCGTACTGCAGAATACCCTTACTTACGGGGCTCCCTTCATAGG 558183 Query 53394 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 53453 | |||||||| || || ||||||| || |||||||| ||||| || || ||||| |||| Sbjct 558184 TTTCGTATGGACCATCAATCTCAGCCAGCTCACAACTGGCCTCCAAAGCGCCGTAGTAAA 558243 Query 53454 TGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTA 53513 | ||||| || |||| || ||| | | ||||| || ||| | || | | Sbjct 558244 TAGTTTCAAATATCTGCTGATTCAAAAGACCAGCTTCTTCACTTTCATAGGGGAATCGCA 558303 Query 53514 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 53573 |||||| || ||||| || || || ||||| || || || | || | ||||||| || Sbjct 558304 TGAGAATCAAGGCGTCAGCGAAACCCTGAACTCCGATGCCCACGGGGCGATGTCTCAAAT 558363 Query 53574 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTC 53633 | || | | || || || | |||||||| || ||||| || || || || || ||| Sbjct 558364 TGGATTTCTTTGCCTCCGGCAGGGGATAATAGTTTATATCGATTATCTTGTTAAGATTTT 558423 Query 53634 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TTGTC-CATCTATTA 53690 || | ||| || || || ||||| ||||| | | || | | | | Sbjct 558424 TGGTGACCGTCTTGGTAACTTCTTTTAGTTTCTTGAAATCGTACGTCTTCTCGGGTGTGA 558483 Query 53691 CAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 53750 | |||||||| | || || ||||||| || || || || | ||||| | | | | Sbjct 558484 CGAACATGTTAAGGGCGATGGATGCCAAGTTGCATACTGCAATCTCATCTGGCGCAGAGT 558543 Query 53751 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 53810 | | || || || |||||||| || || |||||||| || || | ||| || || || | Sbjct 558544 ACTCTACGATTTCTGTGCAAAGGTTGCTGCACTTGATAGTGCCAACATTCTGCTGGTTGC 558603 Query 53811 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATT 53870 |||| ||| || ||||| ||| | || || | || | || ||||| | ||| | | Sbjct 558604 TCTTCCGGTTGCAGGCATCTTTAAAGAGCATATAAGGATTTCCCGTTTCCACCTGCGCCT 558663 Query 53871 CTATAATCGCTTTCCAGACGACACGAGCCTTTATTA-TAGATTTGTAT--CTCTTTT-CT 53926 | |||||||| ||| | | ||||||| | || | | || | | | || || || Sbjct 558664 CAATAATCGCGAACCACAAGGACTGAGCCTTAACTACTCGGTTGGCACGACCCTCTTGCT 558723 Query 53927 CTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 53986 | | | | ||| ||| |||||| ||||| |||||||||| || | || || Sbjct 558724 CGTACTTCAAGT----ACAGCTTTTCAAATTCGTCGCCCCAAACATCGTGAAGGCCGGGG 558779 Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046 |||| || |||||||| | ||||| || ||| ||| || |||||||| |||||| Sbjct 558780 CATTTATGAGGACACATGAGGGACCAATCCTCGTTGGCCTCTACACGTTTCATGAAGAGA 558839 Query 54047 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106 || || ||||| | || |||| || | | | || || || ||||| || || Sbjct 558840 TCGGGTATCCACAAGGCGTAGAATAAGTCGCGTGCACGATTCTCTTCCTTTCCGGTGTTT 558899 Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166 || || || ||||||||| | | | ||| |||||||| || |||| ||| || | | Sbjct 558900 TTCTTGAGCTCGAGGAACTCGAAGACATCCGAATGCCATGGCTCCAGGTAAATAGCAAAG 558959 Query 54167 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226 | ||||| || ||| ||||||||||| | || | || ||| ||| | || ||| Sbjct 558960 GCGCCAGGACGCTTGCCGCCTCCCTGATCCACATACCGTGCAACGTTGTTAAAGACCCTC 559019 Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286 | ||| |||| | ||||||||| | |||||||| ||| | || || | || | || Sbjct 559020 AGCATGGGAACCAGACCATTGGAGGTGCCATTGGTGCCGCAAATCGAGGTGCCCTTTGCC 559079 Query 54287 CGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATC 54344 ||||| | | | ||| | | || || || |||||| ||| || || | ||||| Sbjct 559080 CGAATGCAATGCACATTCA--GTCCAATACCACCTGCCGATTTTGAAATCATGGCGCACT 559137 Query 54345 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 54404 | | | | | | |||||||| || || || ||||| | | || ||||| Sbjct 559138 GCTCCACGGATTTGAAAATGCCCTCGATCGAGTCGGCCGTCATGGTCAAGAGGAAACACG 559197 Query 54405 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 54464 ||||| || | ||| | || | || ||| | || || || || || ||||| Sbjct 559198 AAGACAACTGTGGGCGATTTGTGGCAGCGGCAAAAAGAGTTGGCGAGGCATGAGTAAAGA 559257 Query 54465 ATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTC 54524 || || || | |||||||| || || | ||| | || |||||| | || |||| Sbjct 559258 ATCGCTCGGACAAAAGATTGTAGGTTTCCACAGCAGCATCGATATCCTCTCCGTGGATTC 559317 Query 54525 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 54584 | | ||| || ||||| ||||| || || || | ||| ||||||| ||| | || | Sbjct 559318 CAATTGCCACGCGCATCAACATATGTTGTGGGCGCTCAGCGATCTTTCCGTTCCTCTTAA 559377 Query 54585 GCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 54644 |||| || ||| ||| | || ||||||||||||||||| ||| |||||| || || | Sbjct 559378 GCAAATATGATCGTTCGAGGGTCTTAAAACCAAAATAGTTATATCCAAAGTCGCGATCAT 559437 Query 54645 AAATAATAACTGAGTTGAG 54663 | || ||| ||||| || Sbjct 559438 AGATTATAGAGGAGTTTAG 559456 >seq5351 Length=991022 Score = 136 bits (150), Expect = 5e-27 Identities = 478/743 (64%), Gaps = 15/743 (2%) Strand=Plus/Plus Query 23835 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 23894 |||||||| |||||||| || || || |||||||| || || || || || | Sbjct 257258 ACTCCCATGCGCTGGTATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGC 257317 Query 23895 GATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAAT 23954 || || | |||||||| | | || || | || ||||| || || ||||| Sbjct 257318 GAAATCATCTCCATGAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAAC 257377 Query 23955 TCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATT 24014 || | ||| | || || || ||||| ||||| ||||| || |||||||| Sbjct 257378 TCCACCAGCAAACGGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATG 257437 Query 24015 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 24074 || ||||| || ||||| || || | || || || || || ||||| | ||||| || Sbjct 257438 CCGATAAGGTTCACTGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCG 257497 Query 24075 GTTATAATAGATCTTACTGTTTCT---TCACTCGG-TGGATACAATAAATGTTTAAACAT 24130 || ||| | | || | | || || || | | | || | || | ||||| Sbjct 257498 CGAAT----GATTTCAATGATGCGCTCTCGCTTGGGTCGCTGCACAAGGTGCTGGAACAT 257553 Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 || |||||||||||| || ||||||||||| || || | |||||||| || || Sbjct 257554 CAGCACTGCGAAATCGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGT 257613 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 ||||| ||||| ||||| ||||| || ||||| || ||||| || || || || Sbjct 257614 CAGTCCCGGCATCAGGCCTCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA 257673 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATG 24310 ||| || ||||| || || |||||||| || | | || || | | |||| | || Sbjct 257674 GAAGATGCCTTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAGTTG--GCTGACTTG 257731 Query 24311 -----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 ||||| ||||| || ||||| || || ||||| || || || Sbjct 257732 GAGGAGATCCAGGACATGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTTTCGATG 257791 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 || || || || || | | | | ||| | ||||| || |||| | ||| Sbjct 257792 GCGTTGAACAGGTACTCTCGCTGGTGCGGATCGCGGATGTATGTGTCGATCAGCACACTG 257851 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 ||||| ||||| || | ||| || ||||| || || || |||||||| || | ||||| Sbjct 257852 TACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCT 257911 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 || ||||| || || | || || || | | ||| ||||| || || || || | Sbjct 257912 GTGATCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTGACAATGCCATCGGAG 257971 Query 24546 GCTGCAAAAAACGCCAATACATG 24568 ||||| || || ||||| || || Sbjct 257972 GCTGCGAAGAAGGCCAACACGTG 257994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593678896573920