Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5614 129 7e-25 seq4595 129 7e-25 seq5371 102 9e-17 seq5644 100 3e-16 seq5454 96.9 4e-15 seq5659 93.3 5e-14 seq5590 93.3 5e-14 seq5384 93.3 5e-14 seq5597 91.5 2e-13 seq3672 91.5 2e-13 >seq5614 Length=3457230 Score = 129 bits (142), Expect = 7e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||||||||| || ||||||||| || ||||| || | |||||| || | Sbjct 1200688 ACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCC 1200629 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| ||||| || || | |||||||||||| | || | | |||||| Sbjct 1200628 GTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTT 1200569 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| || | | || ||| | ||| || || | ||||| Sbjct 1200568 GTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGTTCGACCTCCAAGGTGAT 1200509 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| ||||| |||| ||||| |||||||| ||||| || Sbjct 1200508 GGTCTTGCCGGTTAAAGTCTTGACAAAGATCTGCATATT 1200470 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | || ||||| ||||||||||| || ||||||||| || ||||| || | | Sbjct 1201155 CCACCACGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCGGAC 1201096 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || |||||||| ||||| || || | |||||||||||| | || Sbjct 1201095 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1201036 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||||||| ||| || |||| || | | || ||| | || || Sbjct 1201035 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACC 1200976 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || | ||||| |||||||| ||||| Sbjct 1200975 TCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200929 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||||||||| || ||||||||| || ||||| || | |||||| || | Sbjct 1200916 ACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCC 1200857 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| ||||| || || | |||||||||||| | || | | |||||| Sbjct 1200856 GTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTT 1200797 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| || | | || ||| | || || || | ||||| Sbjct 1200796 GTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGAT 1200737 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || | ||||| |||||||| ||||| Sbjct 1200736 GGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200701 >seq4595 Length=987418 Score = 129 bits (142), Expect = 7e-25 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | |||||||||||| || |||||| || ||||||||||||| Sbjct 267812 TCCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAATCAGA 267871 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||| ||| | || || |||||||| || ||||| || || |||||||| || | || Sbjct 267872 CAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGG 267931 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT---TC 43132 | | |||||||||| |||||| || | || | | ||||| |||| || Sbjct 267932 AATTCCCTCCTTGTCCTGGATTTTGGCCTTTACATTCTCGATAGTGTC---CGATGGCTC 267988 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||||| || || || || ||||| || ||||| ||||| Sbjct 267989 CACCTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 268039 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | |||||| ||||| || |||||| || || |||||||| | Sbjct 267356 TCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGA 267415 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||| || |||| || || ||||| || ||||| || | |||||||| || | || Sbjct 267416 CAAAGTGCGACCGTCCTCCAGTTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGG 267475 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||||||| |||||| || | || | | ||||| || || || Sbjct 267476 GATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATAGTGTCCGACGGCTCTAC 267535 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || || ||||| || ||||| ||||| Sbjct 267536 CTCCAGAGTGATGGTTTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 267583 >seq5371 Length=1725283 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1642145 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 1642086 Query 60124 TATACTACCGAGGATTGAATATAT 60147 ||||||| ||||||||| ||| || Sbjct 1642085 TATACTATCGAGGATTGGATACAT 1642062 >seq5644 Length=373383 Score = 100 bits (110), Expect = 3e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 364294 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 364353 Query 60124 TATACTACCGAGGATTGAATATATAACTTG 60153 ||||||| |||||||| |||| | |||| Sbjct 364354 TATACTATCGAGGATTTGATATCTTTCTTG 364383 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 ||| |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| | Sbjct 358654 AATATTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAA 358713 Query 60120 CCACTATACTACCGAGGA 60137 ||||||||||| |||||| Sbjct 358714 CCACTATACTATCGAGGA 358731 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 ||| |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| | Sbjct 359503 AATATTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAA 359562 Query 60120 CCACTATACTACCGAGGA 60137 ||||||||||| |||||| Sbjct 359563 CCACTATACTATCGAGGA 359580 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 358459 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 358400 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 358399 TATACTATCGAGGA 358386 >seq5454 Length=2883911 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1569563 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 1569504 Query 60124 TATACTACCGAGGA--TTGAAT 60143 ||||||| |||||| |||||| Sbjct 1569503 TATACTATCGAGGACGTTGAAT 1569482 >seq5659 Length=366417 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 204504 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 204563 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 204564 ATACTATCGAGGAT 204577 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 282003 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 281944 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 281943 ATACTATCGAGGA 281931 >seq5590 Length=804911 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 480936 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 480995 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 480996 ATACTATCGAGGAT 481009 >seq5384 Length=1708600 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1006170 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1006111 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 1006110 ATACTATCGAGGAT 1006097 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1006437 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 1006496 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 1006497 TATACTATCGAGGA 1006510 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1006937 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1006878 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 1006877 ATACTATCGAGGAT 1006864 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 1007179 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 1007238 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 1007239 TATACTATCGAGGA 1007252 >seq5597 Length=2727327 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 638965 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 638906 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 638905 ATACTATCGAGGA 638893 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 639141 TTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 639200 Query 60123 CTATACTACCGAGGA--TTGAA 60142 |||||||| |||||| ||||| Sbjct 639201 CTATACTATCGAGGACGTTGAA 639222 >seq3672 Length=1287 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 629 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 570 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 569 ATACTATCGAGGA 557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571776472019120