Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5351 132 1e-25 seq5466 98.7 2e-15 >seq5351 Length=991022 Score = 132 bits (146), Expect = 1e-25 Identities = 295/438 (67%), Gaps = 5/438 (1%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 |||||||| || || ||||| |||||||| || || ||||| |||||||||||| | Sbjct 257700 GCCTTTGCCGCCGTGGAAGGCATCTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTG 257641 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | || | |||| || || |||| |||||| ||| | || || |||||||| Sbjct 257640 AAGAAGCGAGGCCTGATGCCGGGACTGACCTTCTCCAACGAGCTGATCTCAAGGGACGAG 257581 Query 102041 GGTCTTCATCGCGACTTTGCA-TGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATC 102099 ||||| ||| |||| || ||| ||| || |||| | | || || | |||| | | Sbjct 257580 GGTCTGCATTGCGATTTCGCAGTGC-TGATGTTCCAGCA-CCTTGTGCAGCGACCCAAGC 257523 Query 102100 AAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCAC 102159 |||| | || ||||||| | || || || ||||| || || || ||||| Sbjct 257522 --GAGAGCGCATCATTGAAATCATTCGCGATGCGGTGGCCATTGAGCAGGAGTTCCTCAC 257465 Query 102160 AGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGA 102219 | | ||||||| || || | | || ||||| ||| | ||||| ||||| || || Sbjct 257464 CGATGCCCTGCCAGTGAACCTTATCGGCATGAATTGCGATCTGATGTCGCAGTATATCGA 257405 Query 102220 ATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCAA 102279 || ||||| || | |||| || |||| | | |||| ||| || | || Sbjct 257404 GTTCGTGGCCGACCGTTTGCTGGTGGAGTTGGGCGTTGGAAAGATCTACAACACCAAGAA 257345 Query 102280 CCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGAG 102339 |||||| |||||||| | ||||| || || ||||| |||||||| || |||| Sbjct 257344 CCCCTTTAACTTCATGGAGATGATTTCGCTGGACGGCAAGACAAACTTTTTCGAGAAGAA 257285 Query 102340 AGTCGCCGAGTATCAACG 102357 || | ||| || || || Sbjct 257284 GGTTGGCGAATACCAGCG 257267 >seq5466 Length=1802269 Score = 98.7 bits (108), Expect = 2e-15 Identities = 264/399 (66%), Gaps = 10/399 (3%) Strand=Plus/Minus Query 35395 GGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATAC 35454 ||| ||| ||||||| || || || ||||| ||||| || ||||| || || || | || Sbjct 949639 GGGTGATCTGGGACCGGTGTATGGCTTCCAGTGGCGCCACTTTGGGGCGGAGTACGGAAC 949580 Query 35455 CTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCT 35514 ||| ||| || || || ||||| | || || ||| | || | | | ||| | Sbjct 949579 CTGCGACGACGACTACACAGGCAAGGGCGTCGACCAGTTGCGCCATGTGATCGACACCAT 949520 Query 35515 GAGAGAAAATCCAGATG-ATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTC 35573 | |||| | || | | | || | || || ||| |||| |||||||| |||| | | Sbjct 949519 TA-AGAACAACCCGTCGGACAGGCGCATCATCATGTCGGCGTGGAATCCGTTGGACATAC 949461 Query 35574 ACCTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAA------T 35626 |||||||||||||| ||||| || || || || || || || | | Sbjct 949460 CGAAAATGGCTCTTCCTCCGTGCCA-TTGCCTGGCGCAGTTCTACGTTTCCCAAACGCGC 949402 Query 35627 GGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTC 35686 || ||| | || |||||| |||| ||| | || | || | || ||||||| ||||| Sbjct 949401 GGTGAACTTTCCTGCCAGCTGTACCAGAGGAGTGCCGACATGGGCCTGGGCGTACCCTTT 949342 Query 35687 AATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCG 35746 ||||| || || ||| | || || || | |||| ||| | | |||||| || ||| Sbjct 949341 AATATCGCGTCCTACGCCCTGCTCACCTACATGATTGCCCATGTAACGGGTCTCAAGCCG 949282 Query 35747 GGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTAT 35785 || || || | | ||| || |||||||| ||| | ||| Sbjct 949281 GGCGACTTCGTGCACACCCTGGGTGACGCGCACGTCTAT 949243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989511044775070