Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq4499 223 1e-53 >seq4499 Length=1650 Score = 223 bits (246), Expect = 1e-53 Identities = 639/968 (66%), Gaps = 31/968 (3%) Strand=Plus/Plus Query 33402 GCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTAC 33461 ||||||||||| || |||||||| | || | | || | || ||| ||| || Sbjct 65 GCCTCAGCTTCTGCTGGCGGGATGTTTCCAATGGAAGACAGAATGCGGCGATTATTGAAC 124 Query 33462 CAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGC 33521 ||| ||||||||| |||||||||||||| || | || || ||||||| || | || Sbjct 125 CAGTCGACCCATTTAAGCGTTGCCAGTTCAACAGCGTCTCTGTTTTTCCATGGTCCTTGC 184 Query 33522 CGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAG 33581 |||| || ||||| || ||||| || ||||| || || || || || ||||| || ||| Sbjct 185 CGATAGATGAGTTCAGTTTTGTAAAGTCCGTTAATGGTCTCCGCGAGGGCATTATCATAG 244 Query 33582 CTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAG 33641 || || |||||||| |||| ||| ||| || |||||||| | || ||||| Sbjct 245 GAATCCCCAACACTGCCGACAGAGGCAACGAGGCCCGCTTCAGCCAGTCTTTGCGTGTAG 304 Query 33642 CGAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCC 33701 |||||| || |||||| | ||||| |||||||| || ||| | | ||||| Sbjct 305 CGAATGGACACATATTGACAGCCCCTATCGGAATGGTGGGTCACTTT---GCCCTCG--- 358 Query 33702 GGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGT---GGTCATC 33758 || || | | |||| || || ||||| |||||||| || ||||| || || | | Sbjct 359 GGCTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAAGTCGGTATGGGCCGTT 418 Query 33759 GACGAGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACG 33818 || || ||| ||||| || ||||| |||||| || || || || | ||| ||||| Sbjct 419 GATGA---GACACGCCACCCCACAATCACGCGGGCAAATACATCAATGATGAAGGCCACA 475 Query 33819 TACAGCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAG-CTGATTCGG 33877 |||| |||| ||||| || || || || ||||||||||| |||||||| ||| | || Sbjct 476 TACACAAAGCCCTGCCAGGTGGAAACGTAAGTAAAATCCGAAACCCAGAGCCTGTTGGGG 535 Query 33878 TCGGTCAGCCTTGAACTGCCGGTTGACTCGGTCCAGCGGGC-GCGGCGCGGTCACATCGG 33936 | | ||| | ||||| || | || | ||| | |||| | | || || ||| | Sbjct 536 GCTG-GAGCATGAAACTGGCGCTGCACCAGATCCTGTGGGCAGGGACGTTGT-GGATCAG 593 Query 33937 TAATCGTCGTGCGAACACGCTTACCGCGAACTGCGCCACGCAAGCCCTGCAGCTTCATCA 33996 || || | | | ||| || |||| | || | ||| | | ||||| Sbjct 594 GCCGTGTGGTTCTGATCCCCTTGCCACGAATGACACCTTTAAGTCCCATCTGGCGCATCA 653 Query 33997 ACCGTCCGACCGTGCAGCGTGCCACCGTAATGCCTTCCCGGTTCATCTGCTTCCAGACCT 34056 ||| | ||||||||||| || | || ||||||| || | | ||| | |||||||| Sbjct 654 GCCGCTCTACCGTGCAGCGGGCGATAGTCCTGCCTTCGCGTCTGAGCTGATGCCAGACCT 713 Query 34057 TCGGCACGCCGTAGACCTGCATGTTGGCCTGCCAGACACGCTTGATCTCCGGTTGCAAAA 34116 | || | || ||||| | || | | ||| || | ||| || || || || Sbjct 714 TACGCGCTCCATAGACACAAAAATTATCGTTCCATACTCTACGGATTTC--GTCGCTCAA 771 Query 34117 GCTCATCGCGTTTC--GC-GCGGGCGCAGCGTTTCGACGGATCGCGAAGTTGTGCTGCAT 34173 ||| | | |||| || ||| | ||| | || | | || | | || ||||| Sbjct 772 -CTCTTTGTCTTTCTGGCTGCGCACACAGGGATTTTTCTG-TCTGGCAACGGT--TGCAT 827 Query 34174 GGCGTCGGTAGCCCGACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCCGAAGG 34233 || | || || |||||| ||| || ||||||||| | | |||| || | | Sbjct 828 ------AATAAACAGATGGTGCAATCGGCAGGATCTTGCAGATTGACCCGACACCATATG 881 Query 34234 TGTCGCGATGCTGATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGCCTG 34293 | | || |||| |||||||||| | ||| | | |||| ||||||||||| |||||||| Sbjct 882 TCTGCCGGTGCTCATCAATGAAGCGCGTCATGGCCTGAACCGGCGGTCGAGTTCCGCCTG 941 Query 34294 AGCGAAAAACGCGCTCGCCAGTTTGAGAATCTCGTTGGTCCGGCGCAGTTCCTTGACCTC 34353 || ||| |||| ||| || || || |||| | | |||||||| | ||| Sbjct 942 GGCAAAATACGCAGAAGCCTTACGCAGGATTTCATTGGCCTGCCGCAGTTCGCGGTTCTC 1001 Query 34354 GCGCTCCA 34361 ||||||| Sbjct 1002 TCGCTCCA 1009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170660338195580