Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5380 390 1e-103 seq5351 199 5e-46 >seq5380 Length=870010 Score = 390 bits (432), Expect = 1e-103 Identities = 1220/1877 (65%), Gaps = 38/1877 (2%) Strand=Plus/Plus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 |||||||| ||||| ||||||| | ||| || || || || |||||||||||||| Sbjct 557585 CTTGTCCACGGTGAACTGAATGGCGTTTGCTGCCGGCTTTGTGCGCAGATAGTACATTCC 557644 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 ||||| || || |||| |||||| || || ||| || || || | || Sbjct 557645 GGTTTTAAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTAAGCTTTCCGTAGTTTGG 557704 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 ||||| | ||| || || | || || |||||||||||||| || || | || || || Sbjct 557705 CTCTGCCACATGAATGTTGAAGGACTGGCTTTGATCGATGAAAGCACCTCGATCAGCGGC 557764 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62274 |||||| || | | ||| | |||||||| | ||||| |||| || | | | Sbjct 557765 CATTTTAATAGTAGACTTCACAGAGATTTCCCACACGGTTTTGTAAAGATCTCGGACCTT 557824 Query 62275 CTTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTACCA-TAATCCTATTCTTGA 62331 || | ||| || || || | |||||||| || || || | | || ||||| | Sbjct 557825 CTGCGGGATGGCTTCGATGTTTTGAATGGAGCC-CCTGCTGGAAATTATTTGGTTCTTCA 557883 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391 | ||||| | ||| || | || || | | || | | || |||| || |||| Sbjct 557884 TATCATCGTCCCACAAGTCCAATTCAGTCAGGTCCCTCAACAAGTGATGGTTGACCACTT 557943 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 | ||||| || |||| |||| | ||||||||||||| | |||||||| || | || | Sbjct 557944 GAAATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGTCGTATACGGCTCGAAAGATT 558003 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511 | || || |||| ||| || ||||| |||||||| |||||||| ||||| | | | Sbjct 558004 CGTTGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCATAGGAGCCACAAGCAGGGAGT 558063 Query 62512 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACG 62571 | || | ||||| | |||| || || || | | ||| | ||| || | || | Sbjct 558064 TCCTGACACCGTGCTTCTTGATCGACTCCTTCAGTTTCTGCCAGTCCCACAGGTTCGTTG 558123 Query 62572 G-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCT 62624 | | | ||| || || |||||||| ||||| || ||| Sbjct 558124 GCGTTTTGTCCCACATGTCG-------TACTGCAGAATACCCTTACTTACGGGGCTCCCT 558176 Query 62625 ACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCG 62684 |||| || || ||||| || || ||||||| || | |||||| ||||| || || ||| Sbjct 558177 TCATAGGTTTCGTATGGACCATCAATCTCAGCCAGCTCACAACTGGCCTCCAAAGCGCCG 558236 Query 62685 TAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGA 62744 || ||||| |||||||| |||| || ||| | | ||||| || ||| | || Sbjct 558237 TAGTAAATAGTTTCAAATATCTGCTGATTCAAAAGACCAGCTTCTTCACTTTCATAGGGG 558296 Query 62745 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62804 | | |||||| || ||||| || || || ||||| || || || | || | |||| Sbjct 558297 AATCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACTCCGATGCCCACGGGGCGATGT 558356 Query 62805 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62864 ||| ||| || | | || || || | |||||||| || ||||| || || || || Sbjct 558357 CTCAAATTGGATTTCTTTGCCTCCGGCAGGGGATAATAGTTTATATCGATTATCTTGTTA 558416 Query 62865 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC- 62923 |||||| || | ||| || || || ||||| ||||| | | || Sbjct 558417 AGATTTTTGGTGACCGTCTTGGTAACTTCTTTTAGTTTCTTGAAATCGTACGTCTTCTCG 558476 Query 62924 --TATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCA 62981 | | || |||||||| | || | ||||||| || || || || | ||||| | Sbjct 558477 GGTGTGACGAACATGTTAAGGGCGATGGATGCCAAGTTGCATACTGCAATCTCATCTGGC 558536 Query 62982 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGT 63041 | | || | || || || |||||||| || || ||||||||||| || | ||| || Sbjct 558537 GCAGAGTACTCTACGATTTCTGTGCAAAGGTTGCTGCACTTGATAGTGCCAACATTCTGC 558596 Query 63042 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63101 || || ||||| ||| || ||||| ||| | || || | ||| | || ||||| | | Sbjct 558597 TGGTTGCTCTTCCGGTTGCAGGCATCTTTAAAGAGCATATAAGGATTTCCCGTTTCCACC 558656 Query 63102 TGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTA-TAGATTTGTATCTCC 63159 || | || |||||||| ||| | | ||| ||||||| | || | | || | | || Sbjct 558657 TGCGCCTCAATAATCGCGAACCACAAGGACT-GAGCCTTAACTACTCGGTTGGCACGACC 558715 Query 63160 TTTCTCTT--TCGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63215 ||||| ||||| | |||| | | ||| || ||||| |||||||||| || Sbjct 558716 ---CTCTTGCTCGTACTTCAAGTACAGCTT--TTCAAATTCGTCGCCCCAAACATCGTGA 558770 Query 63216 AATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63275 | | || |||| || |||||||| | ||||| || ||| ||| || |||||| Sbjct 558771 AGGCCGGGGCATTTATGAGGACACATGAGGGACCAATCCTCGTTGGCCTCTACACGTTTC 558830 Query 63276 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTT 63335 || |||||||| || ||||| | || |||| || | || | || || || ||| Sbjct 558831 ATGAAGAGATCGGGTATCCACAAGGCGTAGAATAAGTCGCGTGCACGATTCTCTTCCTTT 558890 Query 63336 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63395 || || || || || || ||||||||| | | | ||| |||||||| || |||| ||| Sbjct 558891 CCGGTGTTTTTCTTGAGCTCGAGGAACTCGAAGACATCCGAATGCCATGGCTCCAGGTAA 558950 Query 63396 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63455 || || | | ||||| || ||| ||||||||||| | || | || ||| ||| Sbjct 558951 ATAGCAAAGGCGCCAGGACGCTTGCCGCCTCCCTGATCCACATACCGTGCAACGTTGTTA 559010 Query 63456 TAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCT 63515 | || |||| ||| |||| | ||| || || | |||||||| ||| | || || Sbjct 559011 AAGACCCTCAGCATGGGAACCAGACCATTGGAGGTGCCATTGGTGCCGCAAATCGAGGTG 559070 Query 63516 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63573 || | || ||||| | | | ||| || || || || |||||| ||| || || | Sbjct 559071 CCCTTTGCCCGAATGCAATGCACATT--CAGTCCAATACCACCTGCCGATTTTGAAATCA 559128 Query 63574 ATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTA 63633 ||||| | | | | | | ||||| || || || | ||||| | | | Sbjct 559129 TGGCGCACTGCTCCACGGATTTGAAAATGCCCTCGATCGAGTCGGCCGTCATGGTCAAGA 559188 Query 63634 GAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63693 | ||||| ||||| || | ||| | || | || ||| | || || || || | Sbjct 559189 GGAAACACGAAGACAACTGTGGGCGATTTGTGGCAGCGGCAAAAAGAGTTGGCGAGGCAT 559248 Query 63694 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63753 | ||||| || || || | |||||||| || || | ||| | || |||||| | Sbjct 559249 GAGTAAAGAATCGCTCGGACAAAAGATTGTAGGTTTCCACAGCAGCATCGATATCCTCTC 559308 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGT 63813 || ||||| | ||| || ||||| ||||| || || || | ||| | || || || Sbjct 559309 CGTGGATTCCAATTGCCACGCGCATCAACATATGTTGTGGGCGCTCAGCGATCTTTCCGT 559368 Query 63814 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63873 | | || | ||| || ||| ||| | || ||||||||||||||||| ||| ||||| Sbjct 559369 TCCTCTTAAGCAAATATGATCGTTCGAGGGTCTTAAAACCAAAATAGTTATATCCAAAGT 559428 Query 63874 CTCGTTCGTAAATAATA 63890 | || || || || ||| Sbjct 559429 CGCGATCATAGATTATA 559445 >seq5351 Length=991022 Score = 199 bits (220), Expect = 5e-46 Identities = 488/739 (66%), Gaps = 7/739 (1%) Strand=Plus/Plus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 |||||||| |||||||| || || || |||||||| || || || || |||| Sbjct 257258 ACTCCCATGCGCTGGTATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGC 257317 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 || || | |||||||| | ||| || || | ||||| || ||| || ||||| Sbjct 257318 GAAATCATCTCCATGAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAAC 257377 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 || | ||| | || || ||||| || ||||| ||||| || |||||||| Sbjct 257378 TCCACCAGCAAACGGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATG 257437 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || || || || ||||| || || | || || || || || ||||||| ||||||| Sbjct 257438 CCGATAAGGTTCACTGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCG 257497 Query 33522 GTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAA 33581 || || | | | ||| | ||| | || | | || | ||||||| Sbjct 257498 CGAATGATTTCAATGATGCGCTCTCGCTTGGGTCGCTGCACAAGGTGCTGGAACATCAGC 257557 Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 |||||||||||| |||||||||||||| || || | ||||| || || || ||| Sbjct 257558 ACTGCGAAATCGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGTCAGT 257617 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| ||||| ||||| || ||||| || ||||| ||||| ||| |||||| Sbjct 257618 CCCGGCATCAGGCCTCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAG 257677 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---- 33757 || ||||| || || |||||||| || | | ||| || | | |||| | || Sbjct 257678 ATGCCTTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAGTTG--GCTGACTTGGAGG 257735 Query 33758 -TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 ||||| ||||| || ||||| || || ||||||||||| ||||| | Sbjct 257736 AGATCCAGGACATGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTTTCGATGGCGT 257795 Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 | || || || | | | | ||| | || || ||||||| | ||| |||| Sbjct 257796 TGAACAGGTACTCTCGCTGGTGCGGATCGCGGATGTATGTGTCGATCAGCACACTGTACA 257855 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 | ||||| || | ||| || ||||| ||||| || |||||||| || | ||||| || | Sbjct 257856 TCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGTGA 257915 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 ||||||| || | || || || | | ||| ||||| || || ||||| ||||| Sbjct 257916 TCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTGACAATGCCATCGGAGGCTG 257975 Query 33997 CAAAAAACGCCAATACATG 34015 | || || ||||| || || Sbjct 257976 CGAAGAAGGCCAACACGTG 257994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629772300369120