Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5380 152 5e-32 >seq5380 Length=870010 Score = 152 bits (168), Expect = 5e-32 Identities = 541/838 (65%), Gaps = 7/838 (1%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||| | || | |||| ||||| ||||| | || ||| |||||||| ||| Sbjct 557589 TCCACGGTGAACTGAATGGCGTTTGCTGCCGGCTTTGTGCGCAGATAGTACATTCCGGTT 557648 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || ||||| | |||| |||||| || || || || ||| |||| | || | Sbjct 557649 TTAAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTAAGCTTTCCGTAGTTTGGCTCT 557708 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || || | | || || |||||||| || || ||||||| || || |||||| Sbjct 557709 GCCACATGAATGTTGAAGGACTGGCTTTGATCGATGAAAGCACCTCGATCAGCGGCCATT 557768 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | || | || ||| || ||||| || ||||| || | | | | || | Sbjct 557769 TTAATAGTAGACTTCACAGAGATTTCCCACACGGTTTTGTAAAGATCTCGGACCTTCTGC 557828 Query 37030 GGTAAATCTAA-ATGTT--GAATAGAACCATTA-TGTAACACAATTGTATTCTTTATGTC 37085 || | || ||||| |||| || || | || || | ||| ||||| || || Sbjct 557829 GGGATGGCTTCGATGTTTTGAATGGAGCCCCTGCTGGAAATTATTTGG-TTCTTCATATC 557887 Query 37086 ATTATTCCACATATTTCTACTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 || | ||||| | | | | | | | || || ||||| | ||| | || || || |||| Sbjct 557888 ATCGTCCCACA-AGTCCAATTCAGTCAGGTCCCTCAACAAGTGATGGTTGACCACTTGAA 557946 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || || || | |||| ||| || || ||||| | ||||| || || | || || | Sbjct 557947 ATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGTCGTATACGGCTCGAAAGATTCGT 558006 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 | || | | || || | ||||||||||| ||||| || || | || ||| || | Sbjct 558007 TGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCATAGGAGCCACAAGCAGGGAGTTCC 558066 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 | | || || | || || || || |||| | ||| ||||| | | ||||| Sbjct 558067 TGACACCGTGCTTCTTGATCGACTCCTTCAGTTTCTGCCAGTCCCACAGGTTCGTTGGCG 558126 Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 | || |||||| || || || |||||||| ||||| | || | | ||| || | Sbjct 558127 TTTTGTCCCACATGTCGTACTGCAGAATACCCTTACTTACGGGGCTCCCTTCATAGGTTT 558186 Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTG 37444 | || || || | ||| | ||| || || ||||| | || | ||| | || || || | Sbjct 558187 CGTATGGACCATCAATCTCAGCCAGCTCACAACTGGCCTCCAAAGCGCCGTAGTAAATAG 558246 Query 37445 TTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATA 37504 |||| || || || ||| || | |||||||| || || | | | | || | Sbjct 558247 TTTCAAATATCTGCTGATTCAAAAGACCAGCTTCTTCACTTTCATAGGGGAATCGCATGA 558306 Query 37505 ATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAG 37564 || || | ||||| ||||||||||| ||||| || | ||| | |||| || ||| | Sbjct 558307 GAATCAAGGCGTCAGCGAAACCCTGAACTCCGATGCCCACGGGGCGATGTCTCAAATTGG 558366 Query 37565 ATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTT 37622 || | | || || |||||||| || ||||| ||||| || || |||||||| Sbjct 558367 ATTTCTTTGCCTCCGGCAGGGGATAATAGTTTATATCGATTATCTTGTTAAGATTTTT 558424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468491101353760