Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4595 113 4e-20 seq5614 111 2e-19 seq5380 111 2e-19 seq5446 91.5 1e-13 >seq4595 Length=987418 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||| || ||||| | || || || || || ||||| || ||| Sbjct 268040 GCCACCACGGAGACGCAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGA 268099 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| || | ||||| ||||| || || ||| |||||||||| |||||||| |||| Sbjct 268100 CAAAGTGCGTCCA-TCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAG 268158 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || || || ||||| |||||| || | | || | ||||| | ||||||| Sbjct 268159 GAATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCA 268218 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| ||||||| || || ||||| || ||||| Sbjct 268219 CCTCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 268267 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||| || ||||| | || ||||| || || ||||| |||||| Sbjct 267584 GCCACCACGGAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGA 267643 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| || | ||||| ||||| || || || |||||||||| |||||||| |||| Sbjct 267644 CAAAGTGCGTCCA-TCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAG 267702 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCC 139714 | || || || || || ||| | || | || | | || | ||||| | |||||| Sbjct 267703 GAATTCCCTCCTTATCT-TGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCC 267761 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || | ||||| ||||||| || || ||||| || ||||| Sbjct 267762 ACCTCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 267811 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || || || ||||| || |||| | ||||| ||||| || || Sbjct 267843 GTAGACTCCTTCTGGATATTGTAATCAGACAGAGTGCGCCCATCTTCAAGCTGCTTGCCG 267902 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| |||||||| ||||| || || || ||||| |||||| ||| Sbjct 267903 GCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTT 267962 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | ||||||||||| | || | ||||| || |||| || Sbjct 267963 ACATTCTCGATAGTGTCCGATGGCTCCACCTCCAGAGTGATGGTCTTTCCAGTCAGGGTC 268022 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 268023 TTCACGAAGATCTGCAT 268039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||| || ||||| | || || || || || ||||| || ||| Sbjct 268268 GCCACCACGGAGACGCAAGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGA 268327 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||| || ||||| || || || | |||||||| |||||||| ||||| Sbjct 268328 CAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGG 268387 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 || || || || || ||| | || | || | | || | ||||| | ||||||| Sbjct 268388 AATTCCCTCCTTATCT-TGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCA 268446 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | ||||| ||||| | || || ||||| || |||||| Sbjct 268447 CCTCCAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATA 268496 >seq5614 Length=3457230 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| ||||| || || || | |||||||| ||||| ||||| || ||| Sbjct 1201156 GCCACCACGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCGGA 1201097 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| || ||||| || |||||| |||||| || ||||| || || || Sbjct 1201096 CAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGG 1201037 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | || |||| |||||| || Sbjct 1201036 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGAC 1200977 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | |||||||||||||| || || || || || |||||| Sbjct 1200976 CTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCATA 1200928 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || || || | |||||||| ||||| ||||| || || | Sbjct 1200927 CCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGAC 1200868 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || ||||| || |||||| |||||| || ||||| || || || Sbjct 1200867 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1200808 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | || |||| |||||| ||| Sbjct 1200807 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACC 1200748 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | |||||||||||||| || || || || || |||||| Sbjct 1200747 TCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCATA 1200700 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || || || | |||||||| ||||| ||||| || || | Sbjct 1200699 CCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGAC 1200640 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || ||||| || |||||| |||||| || ||||| || || || Sbjct 1200639 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1200580 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | || |||| ||| || ||| Sbjct 1200579 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGTTCGACC 1200520 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA--GCTTATGT 139773 || | ||| | ||||||||||| || || || || || || |||||| || ||||| Sbjct 1200519 TCCAAGGTGATGGTCTTGCCGGTTAAAGTCTTGACAAAGATCTGCATATTGCCTATGT 1200462 >seq5380 Length=870010 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || |||||||||||||| | |||| ||||| Sbjct 656790 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAGAGGGTGCGACCATCTTCC 656731 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || ||||| |||||||||| |||||||| ||||| || ||||||||||| || Sbjct 656730 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC-CTG 656672 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | ||| | || || | || || ||||||| ||| | ||||| Sbjct 656671 AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGGGTGATGGTCTT 656612 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | || || ||||| || ||||| Sbjct 656611 GCCCGTGAGGGTCTTAACGAAGATCTGCAT 656582 >seq5446 Length=1541693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||| | || ||||| || || ||||| || ||| || |||| || | || || Sbjct 1371110 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCCTC 1371168 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||||| || || |||| ||||| |||||||| || || || || || || || | Sbjct 1371169 CAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCC-T 1371227 Query 139675 GATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | || | | || | ||||| | || |||||||| | ||| | |||| Sbjct 1371228 GAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGTTCCACCTCCAAGGTAATGGTCT 1371287 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| | ||||| ||||| |||||||| Sbjct 1371288 TGCCGGTAAGGGTTTTAACGAAGATTTGCAT 1371318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496028320596800