Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5380 401 9e-107 seq5351 206 4e-48 >seq5380 Length=870010 Score = 401 bits (444), Expect = 9e-107 Identities = 1224/1878 (65%), Gaps = 18/1878 (1%) Strand=Plus/Plus Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 |||||||| ||||| ||||||| | ||| || || || || |||||||||||||| Sbjct 557585 CTTGTCCACGGTGAACTGAATGGCGTTTGCTGCCGGCTTTGTGCGCAGATAGTACATTCC 557644 Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGG 78827 ||||| || || |||| ||| || || || ||| || || || | || Sbjct 557645 GGTTTTAAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTAAGCTTTCCGTAGTTTGG 557704 Query 78828 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 78887 ||||| | ||| || || | || || |||||||||||||| || || | || || || Sbjct 557705 CTCTGCCACATGAATGTTGAAGGACTGGCTTTGATCGATGAAAGCACCTCGATCAGCGGC 557764 Query 78888 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 78946 |||||| || | | ||| | |||||||| | ||||| |||| || | | | Sbjct 557765 CATTTTAATAGTAGACTTCACAGAGATTTCCCACACGGTTTTGTAAAGATCTCGGACCTT 557824 Query 78947 CTTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCCA-TAATCCTATTCTTGA 79003 || | ||| || || || | |||||||| || || ||| | | || ||||| | Sbjct 557825 CTGCGGGATGGCTTCGATGTTTTGAATGGAGCC-CCTGCTGGAAATTATTTGGTTCTTCA 557883 Query 79004 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 79063 | || || | ||| || | || || | | || | | || | || || |||| Sbjct 557884 TATCATCGTCCCACAAGTCCAATTCAGTCAGGTCCCTCAACAAGTGATGGTTGACCACTT 557943 Query 79064 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATT 79123 ||||||| || |||| |||| | ||||||||||||| | ||||| || || | |||| Sbjct 557944 GAAATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGTCGTATACGGCTCGAAAGATT 558003 Query 79124 CATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTAT 79183 | || || |||| ||| || ||||| ||||| || |||||||| ||||| | | | Sbjct 558004 CGTTGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCATAGGAGCCACAAGCAGGGAGT 558063 Query 79184 TTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACG 79243 | || | ||||| |||| || || || | ||| ||||| || | | | Sbjct 558064 TCCTGACACCGTGCTTCTTGATCGACTCCTTCAGTTTCTGCCAGTCCCACAGGTTCGTTG 558123 Query 79244 GGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATG 79303 | | ||| | || || || |||||||| ||||| || ||| || | Sbjct 558124 GCGTTTTGTCCCACATGTCGTACTGCAGAATACCCTTACTTACGGGGCTCCCTTCATAGG 558183 Query 79304 TTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAA 79363 |||| || || || || | || || | |||||||| ||||| || || ||||| |||| Sbjct 558184 TTTCGTATGGACCATCAATCTCAGCCAGCTCACAACTGGCCTCCAAAGCGCCGTAGTAAA 558243 Query 79364 TGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTA 79423 | ||||| || |||| || ||| | | |||||| || ||| | || | | Sbjct 558244 TAGTTTCAAATATCTGCTGATTCAAAAGACCAGCTTCTTCACTTTCATAGGGGAATCGCA 558303 Query 79424 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 79483 |||||| || ||||| || || || ||||| || || || | || | ||||||| || Sbjct 558304 TGAGAATCAAGGCGTCAGCGAAACCCTGAACTCCGATGCCCACGGGGCGATGTCTCAAAT 558363 Query 79484 TAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCC 79543 | || | | || || || | |||||||| || ||||| || || || || ||||| Sbjct 558364 TGGATTTCTTTGCCTCCGGCAGGGGATAATAGTTTATATCGATTATCTTGTTAAGATTTT 558423 Query 79544 TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA--TCGTC-CATCTATTA 79600 || | ||| || || |||||||| ||||| | || || | | | | Sbjct 558424 TGGTGACCGTCTTGGTAACTTCTTTTAGTTTCTTGAAATCGTACGTCTTCTCGGGTGTGA 558483 Query 79601 CAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 79660 | |||||||| | |||| ||||||| || || || || | ||||| | | | | Sbjct 558484 CGAACATGTTAAGGGCGATGGATGCCAAGTTGCATACTGCAATCTCATCTGGCGCAGAGT 558543 Query 79661 ATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTAC 79720 | | || ||||| ||||| ||||| || ||||| || || || | ||| || || || | Sbjct 558544 ACTCTACGATTTCTGTGCAAAGGTTGCTGCACTTGATAGTGCCAACATTCTGCTGGTTGC 558603 Query 79721 TCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATT 79780 |||| ||| || ||||| ||| | || || | ||| | || ||||| | ||| | | Sbjct 558604 TCTTCCGGTTGCAGGCATCTTTAAAGAGCATATAAGGATTTCCCGTTTCCACCTGCGCCT 558663 Query 79781 CTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTT 79839 | |||||||| ||| | | ||| ||||||| | || ||| | | ||||| Sbjct 558664 CAATAATCGCGAACCACAAGGACT-GAGCCTTAACTACTCGGTTGG--CACGACCCTCTT 558720 Query 79840 --TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897 ||||| | || | ||| || ||||| ||||||||||||| | || || | Sbjct 558721 GCTCGTACTTCAAGTACAGCTTTTCAAATTCGTCGCCCCAAACATCGTGAAGGCCGGGGC 558780 Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGAT 79957 ||| | ||||||||| | ||||| || | | ||| ||| |||||||| ||||||| Sbjct 558781 ATTTATGAGGACACATGAGGGACCAATCCTCGTTGGCCTCTACACGTTTCATGAAGAGAT 558840 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 | || ||||| | || |||| || | | | || ||| || ||||| || || | Sbjct 558841 CGGGTATCCACAAGGCGTAGAATAAGTCGCGTGCACGATTCTCTTCCTTTCCGGTGTTTT 558900 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 | || || ||||||||| | | | ||| |||||||| || |||| ||| || || | Sbjct 558901 TCTTGAGCTCGAGGAACTCGAAGACATCCGAATGCCATGGCTCCAGGTAAATAGCAAAGG 558960 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137 | || || || ||| ||||||||||| | || | || ||| ||| | || |||| Sbjct 558961 CGCCAGGACGCTTGCCGCCTCCCTGATCCACATACCGTGCAACGTTGTTAAAGACCCTCA 559020 Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 ||| |||| | ||||||||| || |||||||| ||| | || || | || | || | Sbjct 559021 GCATGGGAACCAGACCATTGGAGGTGCCATTGGTGCCGCAAATCGAGGTGCCCTTTGCCC 559080 Query 80198 GAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255 |||| | | | ||| || || || || |||||| ||| || || | ||||| | Sbjct 559081 GAATGCAATGCACATT--CAGTCCAATACCACCTGCCGATTTTGAAATCATGGCGCACTG 559138 Query 80256 TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 | | | | | |||||||| || || | ||||| | | || ||||| Sbjct 559139 CTCCACGGATTTGAAAATGCCCTCGATCGAGTCGGCCGTCATGGTCAAGAGGAAACACGA 559198 Query 80316 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 80375 ||||| || | ||| | || | || ||| | || || || || || ||||| | Sbjct 559199 AGACAACTGTGGGCGATTTGTGGCAGCGGCAAAAAGAGTTGGCGAGGCATGAGTAAAGAA 559258 Query 80376 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCC 80435 | || |||| |||||||| || || | ||| | || |||||| | || ||||| Sbjct 559259 TCGCTCGGACAAAAGATTGTAGGTTTCCACAGCAGCATCGATATCCTCTCCGTGGATTCC 559318 Query 80436 TACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 80495 | || || ||||| ||||| || || || | ||| ||||||| || | || | Sbjct 559319 AATTGCCACGCGCATCAACATATGTTGTGGGCGCTCAGCGATCTTTCCGTTCCTCTTAAG 559378 Query 80496 CAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555 ||| || ||| ||| | || ||||||||||||||||| ||| |||||| || || || Sbjct 559379 CAAATATGATCGTTCGAGGGTCTTAAAACCAAAATAGTTATATCCAAAGTCGCGATCATA 559438 Query 80556 AATAATAACCGAGTTGAG 80573 || ||| ||||| || Sbjct 559439 GATTATAGAGGAGTTTAG 559456 >seq5351 Length=991022 Score = 206 bits (228), Expect = 4e-48 Identities = 492/741 (66%), Gaps = 11/741 (1%) Strand=Plus/Plus Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719 |||||||| |||||||| || || || |||||||| || || || || |||| Sbjct 257258 ACTCCCATGCGCTGGTATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGC 257317 Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779 || || | |||||||| | ||| || || | || || || ||| || ||||| Sbjct 257318 GAAATCATCTCCATGAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAAC 257377 Query 49780 TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 49839 || | ||| | || || || || || ||||| ||||| || |||||||| Sbjct 257378 TCCACCAGCAAACGGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATG 257437 Query 49840 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 49899 || ||||| || ||||| || || | || || || || || ||||||| |||||||| Sbjct 257438 CCGATAAGGTTCACTGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCG 257497 Query 49900 GTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAA 49959 || || | | | ||| | ||| | |||| | || | ||||||| Sbjct 257498 CGAATGATTTCAATGATGCGCTCTCGCTTGGGTCGCTGCACAAGGTGCTGGAACATCAGC 257557 Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 |||||||||||| |||||||||||||| || || || |||||||| || || ||| Sbjct 257558 ACTGCGAAATCGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGTCAGT 257617 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAAAAGA 50077 || ||||| ||||| ||||| || ||||| || ||||| || || || | | | |||| Sbjct 257618 CCCGGCATCAGGCCTCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTG--AAGA 257675 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATG-- 50135 |||| ||||| || ||||||||||| | | | ||| || | || |||| | || Sbjct 257676 AGATGCCTTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAGTTG--GCTGACTTGGA 257733 Query 50136 ---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 ||||| ||||| || ||||| || || ||||||||||| ||||| Sbjct 257734 GGAGATCCAGGACATGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTTTCGATGGC 257793 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 || || || || | | | | ||| | || || ||||||| | ||| || Sbjct 257794 GTTGAACAGGTACTCTCGCTGGTGCGGATCGCGGATGTATGTGTCGATCAGCACACTGTA 257853 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| ||||| || | ||| || ||||| ||||| || |||||||| || | ||||| || Sbjct 257854 CATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGT 257913 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 |||||||| || | || || || | | ||| ||||| || || || || ||| Sbjct 257914 GATCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTGACAATGCCATCGGAGGC 257973 Query 50373 TGCAAAAAACGCCAATACATG 50393 ||| || || ||||| || || Sbjct 257974 TGCGAAGAAGGCCAACACGTG 257994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718217138516560