Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5614 98.7 8e-16 seq4595 98.7 8e-16 >seq5614 Length=3457230 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| ||||| || | | |||||||| | ||| ||||||||| | ||||| |||| Sbjct 1201157 CGCCACCACGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCGG 1201098 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 ||| || ||| |||| || | || ||||| ||||| ||||||||||| || || | | Sbjct 1201097 ACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGG 1201038 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | ||| || || || |||| | ||||| | ||| || ||| | ||||| Sbjct 1201037 GAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGA 1200978 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || ||||| | ||| || ||||| || ||||| Sbjct 1200977 CCTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200929 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||||| | ||| ||||||||| | ||||| || ||| Sbjct 1200699 CCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGAC 1200640 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| || | || ||||| ||||| ||||||||||| || || | || Sbjct 1200639 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1200580 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| | ||||| | ||| || ||| | ||||| Sbjct 1200579 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGTTCGACC 1200520 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || ||||||| ||| || ||||| || ||||| || Sbjct 1200519 TCCAAGGTGATGGTCTTGCCGGTTAAAGTCTTGACAAAGATCTGCATATT 1200470 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||||| | ||| ||||||||| | ||||| || ||| Sbjct 1200927 CCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGAC 1200868 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| || | || ||||| ||||| ||||||||||| || || | || Sbjct 1200867 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1200808 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| | ||||| | ||| || ||| | |||||| Sbjct 1200807 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACC 1200748 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| | ||| || ||||| || ||||| Sbjct 1200747 TCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200701 >seq4595 Length=987418 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | |||||| || | ||| |||||| || | |||||||||||| Sbjct 267357 CCTCCGCGGAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGAC 267416 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || |||| |||| ||| |||||||| |||||||| ||||| ||||| | || Sbjct 267417 AAAGTGCGACCGTCCTCCAGTTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGG 267476 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | || || | ||| ||||| | ||| || Sbjct 267477 ATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATAGTGTCCGACGGCTCTACC 267536 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||| || || ||||| || || ||||| Sbjct 267537 TCCAGAGTGATGGTTTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 267583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381342855741732