Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5380 378 1e-99 seq5351 170 3e-37 >seq5380 Length=870010 Score = 378 bits (418), Expect = 1e-99 Identities = 1211/1871 (65%), Gaps = 20/1871 (1%) Strand=Plus/Plus Query 70788 TTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTAGATAGTACA 70846 || |||||||| || |||||||||| | ||| |||||| || || |||||||||| Sbjct 557582 TTTCTTGTCCACGGTGAACTGAATGGCGTTTGCTGCCGGCTTT-GTGCGCAGATAGTACA 557640 Query 70847 TGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGC 70906 | || ||||| || || |||| |||||| || || ||| || || ||| Sbjct 557641 TTCCGGTTTTAAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTAAGCTTTCCGTAGT 557700 Query 70907 TAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTG 70966 | || || || | ||||| || | ||||| |||||||||||||| || || | || | Sbjct 557701 TTGGCTCTGCCACATGAATGTTGAAGGACTGGCTTTGATCGATGAAAGCACCTCGATCAG 557760 Query 70967 CAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTA 71025 | |||||||| || | | ||| | |||||||| | ||||| |||| || | | Sbjct 557761 CGGCCATTTTAATAGTAGACTTCACAGAGATTTCCCACACGGTTTTGTAAAGATCTCGGA 557820 Query 71026 ATATCTTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCAA-TAATCCTATTT 71082 ||| | ||| || || || | |||||||| || || ||| || | || || Sbjct 557821 CCTTCTGCGGGATGGCTTCGATGTTTTGAATGGAGCC-CCTGCTGGAAATTATTTGGTTC 557879 Query 71083 TTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACT 71142 || || || || | ||| || | || || | | || | | ||| | || || Sbjct 557880 TTCATATCATCGTCCCACAAGTCCAATTCAGTCAGGTCCCTCAACAAGTGATGGTTGACC 557939 Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 ||||||||||| || |||| |||| | ||||||||||||| | |||||||| || | Sbjct 557940 ACTTGAAATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGTCGTATACGGCTCGAAA 557999 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 || || || || |||| ||| || ||||| |||||||| |||||||| ||||| | || Sbjct 558000 GATTCGTTGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCATAGGAGCCACAAGCAGG 558059 Query 71263 CTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCC 71322 || || | ||| || ||| || || || | ||| | ||| || | | Sbjct 558060 GAGTTCCTGACACCGTGCTTCTTGATCGACTCCTTCAGTTTCTGCCAGTCCCACAGGTTC 558119 Query 71323 GATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCA 71382 | ||| || || ||||| || ||| || Sbjct 558120 GTTGGCGTTTTGTCCCACATGTCGTACTGCAGAATACCCTTACTTACGGGGCTCCCTTCA 558179 Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 || || |||||||| || || | || || || |||||||| ||||| || || || || Sbjct 558180 TAGGTTTCGTATGGACCATCAATCTCAGCCAGCTCACAACTGGCCTCCAAAGCGCCGTAG 558239 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||| ||||| || |||| || ||| | | ||||| || ||| | || | Sbjct 558240 TAAATAGTTTCAAATATCTGCTGATTCAAAAGACCAGCTTCTTCACTTTCATAGGGGAAT 558299 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | |||||| || ||||| || || || ||||| || || || | || | |||||| Sbjct 558300 CGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACTCCGATGCCCACGGGGCGATGTCTC 558359 Query 71563 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 ||| || | | || || || | |||||||| || ||||| || || || || ||| Sbjct 558360 AAATTGGATTTCTTTGCCTCCGGCAGGGGATAATAGTTTATATCGATTATCTTGTTAAGA 558419 Query 71623 TTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC---T 71679 ||| || | ||| || || |||||||| ||||| | || || | Sbjct 558420 TTTTTGGTGACCGTCTTGGTAACTTCTTTTAGTTTCTTGAAATCGTACGTCTTCTCGGGT 558479 Query 71680 ATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCG 71739 | || |||| ||| | ||| | ||||||| || || || || | ||||| | | Sbjct 558480 GTGACGAACATGTTAAGGGCGATGGATGCCAAGTTGCATACTGCAATCTCATCTGGCGCA 558539 Query 71740 GCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 71799 | || | || ||||| |||||||| || || |||||||| || || | ||| || || Sbjct 558540 GAGTACTCTACGATTTCTGTGCAAAGGTTGCTGCACTTGATAGTGCCAACATTCTGCTGG 558599 Query 71800 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGA 71859 || ||||| ||| || ||||| ||| | || ||| | ||| | || ||||| | ||| Sbjct 558600 TTGCTCTTCCGGTTGCAGGCATCTTTAAAGAGCATATAAGGATTTCCCGTTTCCACCTGC 558659 Query 71860 GATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC 71918 | || |||||||| ||| | | ||| ||||||| | || ||| | | | Sbjct 558660 GCCTCAATAATCGCGAACCACAAGGACT-GAGCCTTAACTACTCGGTTGG--CACGACCC 558716 Query 71919 TCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976 |||| ||||| | || | ||| || ||||| |||||| ||| || | || Sbjct 558717 TCTTGCTCGTACTTCAAGTACAGCTTTTCAAATTCGTCGCCCCAAACATCGTGAAGGCCG 558776 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036 || |||| || |||||||| | ||||| || | | | | ||| |||||||| ||| Sbjct 558777 GGGCATTTATGAGGACACATGAGGGACCAATCCTCGTTGGCCTCTACACGTTTCATGAAG 558836 Query 72037 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 72096 ||||| || ||||| | || |||| || | | | || ||| || ||||| || Sbjct 558837 AGATCGGGTATCCACAAGGCGTAGAATAAGTCGCGTGCACGATTCTCTTCCTTTCCGGTG 558896 Query 72097 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 72156 || || || || ||||||||| | | | ||| |||||||| || |||| ||| || || Sbjct 558897 TTTTTCTTGAGCTCGAGGAACTCGAAGACATCCGAATGCCATGGCTCCAGGTAAATAGCA 558956 Query 72157 ATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216 | | || || || ||| ||||||||||| | || | || ||| ||| | || Sbjct 558957 AAGGCGCCAGGACGCTTGCCGCCTCCCTGATCCACATACCGTGCAACGTTGTTAAAGACC 559016 Query 72217 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 72276 |||| ||| |||| | ||||||||| | |||||||| ||| | || || | || | Sbjct 559017 CTCAGCATGGGAACCAGACCATTGGAGGTGCCATTGGTGCCGCAAATCGAGGTGCCCTTT 559076 Query 72277 GCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 72334 || ||||| | ||| ||| || || || || |||||| ||| || || | |||| Sbjct 559077 GCCCGAATGCAATGCACATT--CAGTCCAATACCACCTGCCGATTTTGAAATCATGGCGC 559134 Query 72335 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 72394 | | | | | | | |||||||| || || || ||||| | | || |||| Sbjct 559135 ACTGCTCCACGGATTTGAAAATGCCCTCGATCGAGTCGGCCGTCATGGTCAAGAGGAAAC 559194 Query 72395 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 72454 | ||||| || | ||| | || | || ||| | || || || || || |||| Sbjct 559195 ACGAAGACAACTGTGGGCGATTTGTGGCAGCGGCAAAAAGAGTTGGCGAGGCATGAGTAA 559254 Query 72455 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTA 72514 | || || |||| |||||||| || || | ||| | || |||||| | || | Sbjct 559255 AGAATCGCTCGGACAAAAGATTGTAGGTTTCCACAGCAGCATCGATATCCTCTCCGTGGA 559314 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574 |||| | || || ||||| |||||||| || || | ||| ||||||| || | | Sbjct 559315 TTCCAATTGCCACGCGCATCAACATATGTTGTGGGCGCTCAGCGATCTTTCCGTTCCTCT 559374 Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 72634 | | ||| || ||| ||| | || ||||||||||||||||| ||| |||||| || | Sbjct 559375 TAAGCAAATATGATCGTTCGAGGGTCTTAAAACCAAAATAGTTATATCCAAAGTCGCGAT 559434 Query 72635 CGTAAATAATA 72645 | || || ||| Sbjct 559435 CATAGATTATA 559445 >seq5351 Length=991022 Score = 170 bits (188), Expect = 3e-37 Identities = 485/741 (65%), Gaps = 11/741 (1%) Strand=Plus/Plus Query 41765 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAAT 41824 |||||||| |||||||| || || || |||||||| || ||||| || |||| Sbjct 257258 ACTCCCATGCGCTGGTATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGC 257317 Query 41825 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 41884 || || | |||||||| | ||| || || | || || || ||| || ||||| Sbjct 257318 GAAATCATCTCCATGAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAAC 257377 Query 41885 TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATT 41944 || | ||| | || || | ||| || ||||| ||||| || |||||||| Sbjct 257378 TCCACCAGCAAACGGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATG 257437 Query 41945 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 42004 || ||||| || ||||| || || | || || || || || ||||| | ||||| || Sbjct 257438 CCGATAAGGTTCACTGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCG 257497 Query 42005 GTTATAATAGATCTTACTGTTTCT---TCACTCGG-TGGATACAATAAATGTTTAAACAT 42060 || ||| | | || | | || || || | | | || | || | ||||| Sbjct 257498 CGAAT----GATTTCAATGATGCGCTCTCGCTTGGGTCGCTGCACAAGGTGCTGGAACAT 257553 Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 || |||||||||||| ||||||||||| || || || | |||||||| || || Sbjct 257554 CAGCACTGCGAAATCGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGT 257613 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 ||||| ||||| ||||| ||||| || ||||| || || || || || || || Sbjct 257614 CAGTCCCGGCATCAGGCCTCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA 257673 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCA 42238 |||||| ||||| || || |||||||| || | | ||| || | ||| ||| | Sbjct 257674 GAAGATGCCTTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAGTTGGCTGACTTGGA 257733 Query 42239 TG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 | ||||| ||||| || ||||| || || ||||||||||| ||||| Sbjct 257734 GGAGATCCAGGACATGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTTTCGATGGC 257793 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 || || || || | | | | ||| | ||||| ||||||| | ||| || Sbjct 257794 GTTGAACAGGTACTCTCGCTGGTGCGGATCGCGGATGTATGTGTCGATCAGCACACTGTA 257853 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || | ||| || ||||| ||||| || |||||||| || | |||||| || Sbjct 257854 CATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGT 257913 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 | ||| || || | || || || | | ||| || || || || || || ||| Sbjct 257914 GATCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTGACAATGCCATCGGAGGC 257973 Query 42478 TGCAAAAAACGCCAATACATG 42498 ||| || || ||||| || || Sbjct 257974 TGCGAAGAAGGCCAACACGTG 257994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671090928313040