Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5351 311 1e-79 seq5469 201 2e-46 seq5466 156 6e-33 seq5380 125 1e-23 >seq5351 Length=991022 Score = 311 bits (344), Expect = 1e-79 Identities = 584/850 (69%), Gaps = 34/850 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 ||||| ||||||| || ||||| || || ||||| || ||||||||||||||| ||| | Sbjct 258092 AGGCTGAGGCCTCTTTCTGGACCGTGGAGGAGGTGGACCTGTCCAAGGACCTGACCGACT 258033 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 || | || |||| || ||||| | ||||| |||||| | ||||||||||| | Sbjct 258032 GGCAC---CGCTTGAAGGACGACGAGCGCCACTTTATTTCGCACGTGTTGGCCTTCTTCG 257976 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 | | ||||||||| || ||||| || |||||| || || ||| || ||| || | Sbjct 257975 CAGCCTCCGATGGCATTGTCAATGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGA 257916 Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277 | |||||| ||||| ||||| ||||| ||| || ||||||||||||||||| | Sbjct 257915 TCACAGAGGCCCGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGA 257856 Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTA 125337 ||||| | ||||| |||| ||||| ||||||||||| | | | || || | Sbjct 257855 TGTACAGTGTGCTGATCGACACATACATCCGCGATCCGCACCAGCGAGAGTACCTGTTCA 257796 Query 125338 ACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGGTGG 125393 |||| ||||| ||| ||||| | || || |||||| | |||| || ||| Sbjct 257795 ACGCCATCGAAACGATGCCGGC----GGTGAAGCGCAAGGCTGACTGGGCCATGTCCTGG 257740 Query 125394 ATCGATGACGACAAGTCTTC---GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||| | |||||| | | || || | | | || || |||||||| || Sbjct 257739 ATC---TCCTCCAAGTCAGCCAACTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAA 257683 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 ||||||||||| || || || || |||| || ||||| |||||||| || || ||| Sbjct 257682 GGCATCTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGAGGCCTGATG 257623 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 || |||||||| | |||||| | || || | |||||||| || || || || || Sbjct 257622 CCGGGACTGACCTTCTCCAACGAGCTGATCTCAAGGGACGAGGGTCTGCATTGCGATTTC 257563 Query 125571 GCCATTCTACTGTTTC-GCAACT--ATCTGCGTCCCGAGTGCAGATC-CAGCGATGAAAA 125626 || | || |||| | ||| || | ||| ||| || | ||| | || | ||||| Sbjct 257562 GCAGTGCTGATGTTCCAGCACCTTGTGCAGCGACCCAAGCG-AGAGCGCATCATTGAAA- 257505 Query 125627 GGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCT 125686 |||| | | |||||| ||| || || || ||||| || ||||| |||| Sbjct 257504 --TCAT-----TCG----CGATGCGGTGGCCATTGAGCAGGAGTTCCTCACCGATGCCCT 257456 Query 125687 ACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGC 125746 || || | | | || |||||||| ||| | || |||| |||| || ||||| ||||| Sbjct 257455 GCCAGTGAACCTTATCGGCATGAATTGCGATCTGATGTCGCAGTATATCGAGTTCGTGGC 257396 Query 125747 AGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGA 125806 || ||| | ||| |||||| | | ||||| |||||| ||||||| |||||| | Sbjct 257395 CGACCGTTTGCTGGTGGAGTTGGGCGTTGGAAAGATCTACAACACCAAGAACCCCTTTAA 257336 Query 125807 TTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGA 125866 |||||| | || || || || || ||||| |||||||||||||||||||| |||| Sbjct 257335 CTTCATGGAGATGATTTCGCTGGACGGCAAGACAAACTTTTTCGAGAAGAAGGTTGGCGA 257276 Query 125867 GTACAAACGC 125876 ||| | ||| Sbjct 257275 ATACCAGCGC 257266 >seq5469 Length=1487604 Score = 201 bits (222), Expect = 2e-46 Identities = 389/572 (68%), Gaps = 14/572 (2%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| || ||||| || || || | ||| ||||||||||| || |||||| Sbjct 1427395 TTGCGGAAGAAGATCACCCCGGCGCGCGGCCCCCGGAGCGTCTTGTGCGTGGTGGTGGTC 1427454 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || ||||| ||||| || || ||||| | | | || | | |||||| | | Sbjct 1427455 ACGATGTCGGCGTACTCGAACGGCGAGGGAATCAGTCCCGCGGCCACGATGCCCGCCACG 1427514 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || || || |||||||| ||| ||| | | ||| |||| ||||| || Sbjct 1427515 TGGGCCATGTCCGCCATCAGGTAGGCGCCCACGTCGTCGCAGATCTGGCGGAACCGGGCG 1427574 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||| ||| | ||||| | ||||||| ||||| | | || ||| Sbjct 1427575 TAGTCCAGCAGCCTGGAGTAGCACGAGATGCCGGCAATGATGATCTGCGGCCGGAACGTC 1427634 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 ||||| ||| || || ||| | ||||||| || || ||| || | ||||||||| Sbjct 1427635 TTGGCCGCCTCCGCCAGCTTGTCGTAGTCGATGATGCCCGTCGCCGGGTTCACCTTGTAG 1427694 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449 |||||||| ||||| |||| || || || || | || ||| ||| ||| Sbjct 1427695 GGCATGCTCTCGAAGAAGATCGACGTGGCCGATATCTTCTTGGTGGGCGTGAAGAAGCCG 1427754 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 ||||||||||| || ||||||||||| || ||||||||||| || |||| ||| Sbjct 1427755 TGCGTCAGGTGTCCGCCGTCGGGCAGGTCCAGTCCCATGATCCTGTCGTGGGGTCGGCAC 1427814 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || ||||| ||||| | ||||||| || || |||||||| || || || ||| Sbjct 1427815 ACGCCGGTGTAGACGGCCAGGTTGGCCGGGGATCCGGAGTACGGCTGCACGTTGACGCCC 1427874 Query 127570 CATTCGGACTCGTTCAAATTGAA-CGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 || | | ||||| || ||||| |||| | ||| || | ||| || | ||| || | Sbjct 1427875 CACTTGTCCTCGTCCAGGTTGAAGAGCTC-GCGACCGCGTTTCTGGGCCAACAGCTCCAC 1427933 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTATC 127660 || |||| |||||||| || || ||||||| Sbjct 1427934 GCAGTCGACGAACTCGTTGCCGCCGTAGTATC 1427965 >seq5466 Length=1802269 Score = 156 bits (172), Expect = 6e-33 Identities = 300/435 (69%), Gaps = 18/435 (4%) Strand=Plus/Minus Query 70066 GGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGA 70125 ||| |||||||| || ||||| || ||||||||| | |||| || | |||| | | Sbjct 949639 GGGTGATCTGGGACCGGTGTATGGCTTCCAGTGGCGCCACTTTGGGGCGGAGTACGGAAC 949580 Query 70126 CTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACT 70183 |||||| ||| ||||| | || |||| || || || |||| | || | || ||||| Sbjct 949579 CTGCGACGAC-GACTACACAGGCAAGGGCGTCGACCAGTTGC-GCCATGTGATCGACACC 949522 Query 70184 CTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC--TGCAGATT 70241 | |||| ||| || | || ||| | ||| | |||| | |||||||| || | || Sbjct 949521 ATTAAGAACAACCCGTCGGACAGGCGCATCATCATGTCGGCGTGGAATCCGTTGGACAT- 949463 Query 70242 TGCACC--AAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGAT-- 70297 ||| ||||||| || || ||||| || || |||| ||||| ||| | | | Sbjct 949462 ---ACCGAAAATGGCTCTTCCTCCGTGCCATTGCCTGGCGCAGTTCTACGTTTCCCAAAC 949406 Query 70298 ----GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACC 70353 || || | || ||| |||| ||||||||||||||||||||||| || ||||| Sbjct 949405 GCGCGGTGAACTTTCCTGCCAGCTGTACCAGAGGAGTGCCGACATGGGCCTGGGCGTACC 949346 Query 70354 CTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAA 70413 |||||| || || ||| | || | || |||||||||| || | || || || || Sbjct 949345 CTTTAATATCGCGTCCTACGCCCTGCTCACCTACATGATTGCCCATGTAACGGGTCTCAA 949286 Query 70414 AGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 || ||| ||||| |||||| | || ||||| ||||| ||| | || ||| | || || Sbjct 949285 GCCGGGCGACTTCGTGCACACCCTGGGTGACGCGCACGTCTATCTGAACCACGTGGAACC 949226 Query 70474 ATTAAAGGTGCAACT 70488 | | |||| ||| || Sbjct 949225 ACTGAAGGAGCAGCT 949211 >seq5380 Length=870010 Score = 125 bits (138), Expect = 1e-23 Identities = 325/491 (66%), Gaps = 6/491 (1%) Strand=Plus/Minus Query 97774 ACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGT 97833 ||||| | || ||||| |||| ||||| || |||||||| || | ||| |||| | Sbjct 558075 ACGGTGTCAGGAACTCCCTGCTTGTGGCTCCTATGCCCACTGCATCTACTGCCCAGATTA 558016 Query 97834 TTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGT 97893 | ||||| |||||||| || |||| ||| | || || ||| ||||| | || Sbjct 558015 TGGGCAACAACGAATCTTTCGAGCCGTATACGACTAATATTTACACTAGACGAGTTCTGT 557956 Query 97894 CTGGAGAGTTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACGGC--TCAATCT 97951 | || || |||||| || |||| |||||| | | ||| || || | | | | Sbjct 557955 CCGGCGAATTTCAAGTGGTCAACCATCACTTGTTGAGGGACCTG--ACTGAATTGGACTT 557898 Query 97952 GTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTAC 98011 |||| ||||||| ||| | || || | || || || |||||||||||||| Sbjct 557897 GTGGGACGATGATATGAAGAACCAAATAATTTCCAGCAGGGGCTCCATTCAAAACATCGA 557838 Query 98012 CATCATCCCGGAAGAGTTGCGCAGAA-TCTACAAGACTGTCTGGGAGATTCCGACCAAGA 98070 ||||||| | || | || ||| | ||||| || || ||||| || | ||| Sbjct 557837 AGCCATCCCGCAGAAGGTCCG-AGATCTTTACAAAACCGTGTGGGAAATCTCTGTGAAGT 557779 Query 98071 CGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATC 98130 | || | ||||| || || |||||| | ||| || || || || || ||||| Sbjct 557778 CTACTATTAAAATGGCCGCTGATCGAGGTGCTTTCATCGATCAAAGCCAGTCCTTCAACA 557719 Query 98131 TGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACA 98190 | | || || ||||| | |||| | | || || |||||||||||| | ||||| Sbjct 557718 TTCATGTGGCAGAGCCAAACTACGGAAAGCTTACGTCCATACACTTTTACTCCTGGAAAG 557659 Query 98191 AGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCAT 98250 || || || || || |||||||||||| | |||||| |||| | || ||||| | | Sbjct 557658 CTGGGCTTAAAACCGGAATGTACTATCTGCGCACAAAGCCGGCAGCAAACGCCATTCAGT 557599 Query 98251 TTACGGTGGAC 98261 | || |||||| Sbjct 557598 TCACCGTGGAC 557588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741005899317040